PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.126960.1
Common NameCsa_1G076100, LOC101219113
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 311aa    MW: 34739.9 Da    PI: 8.2532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.126960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24.1e-33531931128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+Ptd+e++ e+L++k+ ++       ++++   ++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + 
  Cucsa.126960.1  53 LPAGVKFDPTDQEIL-EHLEAKAISDVgklhplIDEFIPtLEGEnGICYTHPQKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegnET 145
                     799***********9.899999776665665443332222333336**********.555666777******************74434555578 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v+  +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Cucsa.126960.1 146 RWHKTGKTRPVFI-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 193
                     8************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3848212IPR003441NAC domain
PROSITE profilePS510053453212IPR003441NAC domain
PfamPF023656.9E-1554193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTWCSGSDDD ESSQQLTNSS SILHHSSSAV RCPSCGHQIQ LQDQGGIHDL PGLPAGVKFD  60
PTDQEILEHL EAKAISDVGK LHPLIDEFIP TLEGENGICY THPQKLPGVS KDGQIRHFFH  120
RPSKAYTTGT RKRRKVHTDE EGNETRWHKT GKTRPVFIGG AVKGFKKILV LYTNYGRQKK  180
PEKTNWVMHQ YHLGNNEEEK DGELVVSKVF YQTQPRQCSS TAAITNNNNH LLQSEIKFKN  240
SANHHRVGGG VVDYYNPATS NNTNLIISFD HNTEPEVPQL LPNLVLSGDG SSFIRFPPAD  300
TTKRKLERKL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653355.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0A0LV710.0A0A0A0LV71_CUCSA; Uncharacterized protein
STRINGXP_004148793.10.0(Cucumis sativus)
STRINGXP_004167470.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  6. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]