PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.126800.1

Common Name

Csa_1G074960, LOC105435194

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 154aa MW: 16421.9 Da PI: 9.8375

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.126800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	17	75	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++kcprCds+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvP+Ggg+rk+k+ + Cucsa.126800.1 17 QKQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKSKRPK 75 6789***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	7	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-34	17	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.05	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MQGAPNEDQT KASTIIQKQK CPRCDSSNTK FCYYNNYSLS QPRYFCKSCR RYWTHGGTLR 60 NVPIGGGSRK SKRPKSTLLP SSSSSSDTTT TLTPPPPGGS GPLDLATSSY NSSAAFLSSL 120 DVGAAYSSFG GLAWTTATPI NNTIITNNHS SSSX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653263.1	1e-108	PREDICTED: dof zinc finger protein DOF2.2-like
Swissprot	Q9SVC5	1e-33	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A0A0LXF4	1e-106	A0A0A0LXF4_CUCSA; Uncharacterized protein
STRING	XP_008442727.1	1e-77	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Cucsa.126800.1
Entrez Gene	105435194

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]