PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.126650.1
Common NameCsa_1G073830, LOC101209220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LSD
Protein Properties Length: 133aa    MW: 14344.4 Da    PI: 6.4783
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.126650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.61.1e-094367125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Cr lL Y  GA++V+C++C tV
  Cucsa.126650.1 43 CGTCRRLLKYLKGARYVQCSCCSTV 67
                    ***********************99 PP

2zf-LSD141.91.6e-1381105125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+sVRC++C  V
  Cucsa.126650.1  81 CGSCAVLLMYPYGASSVRCSSCTSV 105
                     **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-134070IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-74367IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1278107IPR005735Zinc finger, LSD1-type
PfamPF069436.3E-1181105IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPP PQLSSADMAQ MVCGTCRRLL KYLKGARYVQ  60
CSCCSTVNFV LEAHEVGQVK CGSCAVLLMY PYGASSVRCS SCTSVTEIGV HNRRPPWSVH  120
QGQAAPPTNF VQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819328e-54LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132668e-54LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653178.11e-94PREDICTED: protein LOL2 isoform X1
SwissprotO654263e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A0A0LXE31e-79A0A0A0LXE3_CUCSA; Uncharacterized protein
TrEMBLA0A1S3B6K21e-79A0A1S3B6K2_CUCME; protein LOL2 isoform X3
STRINGXP_004163439.12e-80(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-32lsd one like 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]