PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.126650.1 | ||||||||
Common Name | Csa_1G073830, LOC101209220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 133aa MW: 14344.4 Da PI: 6.4783 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.6 | 1.1e-09 | 43 | 67 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA++V+C++C tV Cucsa.126650.1 43 CGTCRRLLKYLKGARYVQCSCCSTV 67 ***********************99 PP | |||||||
2 | zf-LSD1 | 41.9 | 1.6e-13 | 81 | 105 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V Cucsa.126650.1 81 CGSCAVLLMYPYGASSVRCSSCTSV 105 **********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-13 | 40 | 70 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-7 | 43 | 67 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.4E-12 | 78 | 107 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.3E-11 | 81 | 105 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPP PQLSSADMAQ MVCGTCRRLL KYLKGARYVQ 60 CSCCSTVNFV LEAHEVGQVK CGSCAVLLMY PYGASSVRCS SCTSVTEIGV HNRRPPWSVH 120 QGQAAPPTNF VQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 8e-54 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 8e-54 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653178.1 | 1e-94 | PREDICTED: protein LOL2 isoform X1 | ||||
Swissprot | O65426 | 3e-42 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A0A0LXE3 | 1e-79 | A0A0A0LXE3_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3B6K2 | 1e-79 | A0A1S3B6K2_CUCME; protein LOL2 isoform X3 | ||||
STRING | XP_004163439.1 | 2e-80 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-32 | lsd one like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.126650.1 |
Entrez Gene | 101209220 |
Publications ? help Back to Top | |||
---|---|---|---|
|