PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.125070.1 | ||||||||
Common Name | Csa_6G449320, LOC101206385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25715.7 Da PI: 5.9556 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.2e-20 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle+Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Cucsa.125070.1 69 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 122 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121 | 6.2e-39 | 68 | 160 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rls++q+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e Cucsa.125070.1 68 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLRE 160 69**************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.281 | 64 | 124 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-19 | 65 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-18 | 67 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.05E-18 | 68 | 125 | No hit | No description |
Pfam | PF00046 | 1.9E-17 | 69 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-21 | 70 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-5 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-5 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-8 | 124 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MEWNNGNISF SSNFVSPPPQ SSSSSALLYN YSFNCNYNLD HFPVVETTTP VATGEGEQNM 60 AGAGVDHQKK KRLSQDQLEA LERSFQEEVK LDPDRKMKLS KELGLQPRQI AVWFQNRRAR 120 WKTKQLEHLY DTLKQQFDTI SKEKHNLQQE VMKLRSMLRE QTTRNQGSMA HTDVSGEETT 180 VECTSVEILS CNNYMYNVED FNQISASAPP FWWGAEAAHL PSYP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 1e-141 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 1e-141 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143373.2 | 1e-170 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 6e-51 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0A0KET9 | 1e-169 | A0A0A0KET9_CUCSA; Uncharacterized protein | ||||
STRING | XP_008462523.1 | 1e-154 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-50 | homeobox 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.125070.1 |
Entrez Gene | 101206385 |
Publications ? help Back to Top | |||
---|---|---|---|
|