PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.125070.1
Common NameCsa_6G449320, LOC101206385
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25715.7 Da    PI: 5.9556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.125070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-2069122356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++++qle+Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Cucsa.125070.1  69 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 122
                     56779************************************************9 PP

2HD-ZIP_I/II1216.2e-3968160193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kk+rls++q+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e
  Cucsa.125070.1  68 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLRE 160
                     69**************************************************************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.28164124IPR001356Homeobox domain
SuperFamilySSF466892.22E-1965126IPR009057Homeodomain-like
SMARTSM003891.2E-1867128IPR001356Homeobox domain
CDDcd000868.05E-1868125No hitNo description
PfamPF000461.9E-1769122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-2170131IPR009057Homeodomain-like
PRINTSPR000313.5E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5104120IPR000047Helix-turn-helix motif
PfamPF021831.3E-8124158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEWNNGNISF SSNFVSPPPQ SSSSSALLYN YSFNCNYNLD HFPVVETTTP VATGEGEQNM  60
AGAGVDHQKK KRLSQDQLEA LERSFQEEVK LDPDRKMKLS KELGLQPRQI AVWFQNRRAR  120
WKTKQLEHLY DTLKQQFDTI SKEKHNLQQE VMKLRSMLRE QTTRNQGSMA HTDVSGEETT  180
VECTSVEILS CNNYMYNVED FNQISASAPP FWWGAEAAHL PSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818761e-141LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBankLN7132621e-141LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143373.21e-170PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR06e-51ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0A0KET91e-169A0A0A0KET9_CUCSA; Uncharacterized protein
STRINGXP_008462523.11e-154(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-50homeobox 51
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  5. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]