PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.124600.1 | ||||||||
Common Name | Csa_6G446400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 208aa MW: 22215 Da PI: 8.3552 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.4 | 5.2e-34 | 54 | 134 | 6 | 86 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++++++h kv+gR+RRvR++a+caar+F+L++eLG+ + ++tieWLl+qa+p+i+++tgt++ ++ +++ss ++s s Cucsa.124600.1 54 SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRS 134 689*********************************************************888884444444443333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.5E-30 | 55 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.537 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGSDIVLHKF PSSSDPHSQP PTASHSVVGS NSSPVTITRQ SLLPRKSNTP LSSSSSKDRH 60 IKVNGRGRRV RMPALCAARI FQLTRELGHR SEGETIEWLL RQAEPSIIAA TGTGTVPSGP 120 ISTVSSAMAS SGRSVSCRVQ PVSVGGSGQG MFAMPPPSCR LDLCQPVGME YSAAGNDYRH 180 MPFTALLLQP STAEETEERQ EEEVFRE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 0.0 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143267.1 | 1e-149 | PREDICTED: transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 2e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A0A0KH86 | 1e-146 | A0A0A0KH86_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156285.1 | 1e-147 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 8e-43 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.124600.1 |
Publications ? help Back to Top | |||
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