PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124550.9
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 367aa    MW: 42119.3 Da    PI: 9.2117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124550.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10244291448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
   Cucsa.124550.9 244 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 291
                      ****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.175235295IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-13235293IPR009057Homeodomain-like
SuperFamilySSF466894.24E-16238310IPR009057Homeodomain-like
SMARTSM007171.3E-9240293IPR001005SANT/Myb domain
CDDcd116603.80E-17242292No hitNo description
PfamPF002493.0E-8243291IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEYKQTVDLD QLLDDANEVG EFHATNNLPN TYAEVAENSF RQNRGFQLEN SSSERESQGP  60
SRIDTDAFGI SELSATMVME AEFSNTPVER GLTHELSPGL GTKENGDLSD ENVKGDIVAN  120
ELASCSRERR LRKPTRRYIE ELLDSKSEHN KGRRKLPRKD KYLKVMSTEE SNHIRHEVQM  180
TPRSDSQCGT SVPVQPKSER RHPKKHVPDS EFLSEDELSA TECKNVYSSA KRCKKYDRRR  240
QKMWTLTEVM RLVDGIAEYG TGRWTHIKKH LFASSPHRTP IDLRDKWRNL LRASCVNIQN  300
KKGIEGKQTH ASRPLPKSLL QRVYELANIY PYPKERGPKS VKEITPPMDL IESNSLSFNW  360
GRKKYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-122263552116Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818871e-161LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132621e-161LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657655.10.0PREDICTED: uncharacterized protein LOC101219571 isoform X4
RefseqXP_011657656.10.0PREDICTED: uncharacterized protein LOC101219571 isoform X4
TrEMBLA0A1S3BMG80.0A0A1S3BMG8_CUCME; uncharacterized protein LOC103491166 isoform X4
STRINGXP_004156288.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-22TRF-like 6