PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124550.5
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 447aa    MW: 51068.2 Da    PI: 7.8363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124550.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10324371448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
   Cucsa.124550.5 324 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 371
                      ****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-13315373IPR009057Homeodomain-like
PROSITE profilePS5129415.175315375IPR017930Myb domain
SuperFamilySSF466896.28E-16318390IPR009057Homeodomain-like
SMARTSM007171.3E-9320373IPR001005SANT/Myb domain
CDDcd116604.27E-17322372No hitNo description
PfamPF002494.0E-8323371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDQEVHFCQK FTNMKSHWVK VERPFLPTPL NDSNEVEDLL VESKSEHVLG SCLRVQDFSC  60
DFGYGIQTNG GLDSNSKQGG EHELKFGDLD QLLDDANEVG EFHATNNLPN TYAEVAENSF  120
RQNRGFQLEN SSSERESQGP SRIDTDAFGI SELSATMVME AEFSNTPVER GLTHELSPGL  180
GTKENGDLSD ENVKGDIVAN ELASCSRERR LRKPTRRYIE ELLDSKSEHN KGRRKLPRKD  240
KYLKVMSTEE SNHIRHEVQM TPRSDSQCGT SVPVQPKSER RHPKKHVPDS EFLSEDELSA  300
TECKNVYSSA KRCKKYDRRR QKMWTLTEVM RLVDGIAEYG TGRWTHIKKH LFASSPHRTP  360
IDLRDKWRNL LRASCVNIQN KKGIEGKQTH ASRPLPKSLL QRVYELANIY PYPKERGPKS  420
VKEITPPMDL IESNSLSFNW GRKKYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-113064242109Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207213ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818871e-161LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132621e-161LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143262.20.0PREDICTED: uncharacterized protein LOC101219571 isoform X2
TrEMBLA0A1S3BLK00.0A0A1S3BLK0_CUCME; uncharacterized protein LOC103491166 isoform X2
STRINGXP_004156288.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-21TRF-like 6