PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124550.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 448aa    MW: 51125.2 Da    PI: 7.8363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124550.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10325372448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
   Cucsa.124550.2 325 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 372
                      ****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-13316374IPR009057Homeodomain-like
PROSITE profilePS5129415.175316376IPR017930Myb domain
SuperFamilySSF466896.28E-16319391IPR009057Homeodomain-like
SMARTSM007171.3E-9321374IPR001005SANT/Myb domain
CDDcd116604.21E-17323373No hitNo description
PfamPF002494.0E-8324372IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDQEVHFCQK FTNMKSHWVK VERPFLPTPL NDSNEVEDLL VESKSEHVLG SCLRVQDFSC  60
DFGYGIQTNG GGLDSNSKQG GEHELKFGDL DQLLDDANEV GEFHATNNLP NTYAEVAENS  120
FRQNRGFQLE NSSSERESQG PSRIDTDAFG ISELSATMVM EAEFSNTPVE RGLTHELSPG  180
LGTKENGDLS DENVKGDIVA NELASCSRER RLRKPTRRYI EELLDSKSEH NKGRRKLPRK  240
DKYLKVMSTE ESNHIRHEVQ MTPRSDSQCG TSVPVQPKSE RRHPKKHVPD SEFLSEDELS  300
ATECKNVYSS AKRCKKYDRR RQKMWTLTEV MRLVDGIAEY GTGRWTHIKK HLFASSPHRT  360
PIDLRDKWRN LLRASCVNIQ NKKGIEGKQT HASRPLPKSL LQRVYELANI YPYPKERGPK  420
SVKEITPPMD LIESNSLSFN WGRKKYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-113074252109Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818871e-161LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132621e-161LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657653.10.0PREDICTED: uncharacterized protein LOC101219571 isoform X1
TrEMBLA0A1S3BKX90.0A0A1S3BKX9_CUCME; uncharacterized protein LOC103491166 isoform X1
STRINGXP_004156288.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-21TRF-like 6