PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.124550.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 291aa MW: 33637.3 Da PI: 10.2089 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 168 | 215 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W+ I +++ +Rt+ +++++w+++l Cucsa.124550.12 168 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 215 ****************************99****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.175 | 159 | 219 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 159 | 218 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-16 | 162 | 234 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 164 | 217 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.10E-17 | 166 | 216 | No hit | No description |
Pfam | PF00249 | 2.1E-8 | 167 | 215 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MVMEAEFSNT PVERGLTHEL SPGLGTKENG DLSDENVKGD IVANELASCS RERRLRKPTR 60 RYIEELLDSK SEHNKGRRKL PRKDKYLKVM STEESNHIRH EVQMTPRSDS QCGTSVPVQP 120 KSERRHPKKH VPDSEFLSED ELSATECKNV YSSAKRCKKY DRRRQKMWTL TEVMRLVDGI 180 AEYGTGRWTH IKKHLFASSP HRTPIDLRDK WRNLLRASCV NIQNKKGIEG KQTHASRPLP 240 KSLLQRVYEL ANIYPYPKER GPKSVKEITP PMDLIESNSL SFNWGRKKYD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 6e-13 | 150 | 279 | 2 | 116 | Telomere binding protein TBP1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 57 | ERRLRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681887 | 1e-161 | LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600. | |||
GenBank | LN713262 | 1e-161 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657655.1 | 0.0 | PREDICTED: uncharacterized protein LOC101219571 isoform X4 | ||||
Refseq | XP_011657656.1 | 0.0 | PREDICTED: uncharacterized protein LOC101219571 isoform X4 | ||||
Refseq | XP_011657657.1 | 0.0 | PREDICTED: uncharacterized protein LOC101219571 isoform X5 | ||||
TrEMBL | A0A1S3BMG8 | 0.0 | A0A1S3BMG8_CUCME; uncharacterized protein LOC103491166 isoform X4 | ||||
STRING | XP_004156288.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-22 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.124550.12 |