PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124550.11
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 316aa    MW: 36453.4 Da    PI: 9.7902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124550.11genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10199246448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
  Cucsa.124550.11 199 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 246
                      ****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-13190249IPR009057Homeodomain-like
PROSITE profilePS5129415.175190250IPR017930Myb domain
SuperFamilySSF466893.45E-16193265IPR009057Homeodomain-like
SMARTSM007171.3E-9195248IPR001005SANT/Myb domain
CDDcd116601.89E-17197247No hitNo description
PfamPF002492.4E-8198246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVMEAEFSNT PVERGLTHEL SPGLGTKGRC VTPLEGNICG TILDNRNIHK FNTNENYIEN  60
GDLSDENVKG DIVANELASC SRERRLRKPT RRYIEELLDS KSEHNKGRRK LPRKDKYLKV  120
MSTEESNHIR HEVQMTPRSD SQCGTSVPVQ PKSERRHPKK HVPDSEFLSE DELSATECKN  180
VYSSAKRCKK YDRRRQKMWT LTEVMRLVDG IAEYGTGRWT HIKKHLFASS PHRTPIDLRD  240
KWRNLLRASC VNIQNKKGIE GKQTHASRPL PKSLLQRVYE LANIYPYPKE RDEGEISINL  300
KYSSPISIVT NVYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-12181278290Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818870.0LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657657.10.0PREDICTED: uncharacterized protein LOC101219571 isoform X5
TrEMBLA0A1S3BKY50.0A0A1S3BKY5_CUCME; uncharacterized protein LOC103491166 isoform X5
TrEMBLA0A1S3BMG80.0A0A1S3BMG8_CUCME; uncharacterized protein LOC103491166 isoform X4
STRINGXP_004156288.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-22TRF-like 6