PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.124550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 473aa MW: 53941.4 Da PI: 7.2265 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 356 | 403 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W+ I +++ +Rt+ +++++w+++l Cucsa.124550.1 356 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 403 ****************************99****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.175 | 347 | 407 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-13 | 347 | 405 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.33E-16 | 350 | 422 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 352 | 405 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.99E-17 | 354 | 404 | No hit | No description |
Pfam | PF00249 | 4.3E-8 | 355 | 403 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MDQEVHFCQK FTNMKSHWVK VERPFLPTPL NDSNEVEDLL VESKSEHVLG SCLRVQDFSC 60 DFGYGIQTNG GGLDSNSKQG GEHELKFGDL DQLLDDANEV GEFHATNNLP NTYAEVAENS 120 FRQNRGFQLE NSSSERESQG PSRIDTDAFG ISELSATMVM EAEFSNTPVE RGLTHELSPG 180 LGTKGRCVTP LEGNICGTIL DNRNIHKFNT NENYIENGDL SDENVKGDIV ANELASCSRE 240 RRLRKPTRRY IEELLDSKSE HNKGRRKLPR KDKYLKVMST EESNHIRHEV QMTPRSDSQC 300 GTSVPVQPKS ERRHPKKHVP DSEFLSEDEL SATECKNVYS SAKRCKKYDR RRQKMWTLTE 360 VMRLVDGIAE YGTGRWTHIK KHLFASSPHR TPIDLRDKWR NLLRASCVNI QNKKGIEGKQ 420 THASRPLPKS LLQRVYELAN IYPYPKERDE GEISINLKYS SPISIVTNVY FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-12 | 338 | 435 | 2 | 90 | Telomere binding protein TBP1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 245 | ERRLRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681887 | 0.0 | LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657653.1 | 0.0 | PREDICTED: uncharacterized protein LOC101219571 isoform X1 | ||||
TrEMBL | A0A1S3BKX9 | 0.0 | A0A1S3BKX9_CUCME; uncharacterized protein LOC103491166 isoform X1 | ||||
STRING | XP_004156288.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-21 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.124550.1 |