PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.124180.2 | ||||||||
Common Name | Csa_6G439960, LOC101212961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YA | ||||||||
Protein Properties | Length: 337aa MW: 36603.9 Da PI: 6.9903 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.6e-32 | 162 | 218 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+RgsgGrF Cucsa.124180.2 162 QEPVFVNAKQYQGILRRRQARAKAEVENKL-IKVRKPYLHESRHQHAMRRARGSGGRF 218 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.3E-35 | 160 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.157 | 161 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.2E-28 | 163 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-23 | 164 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 166 | 186 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.3E-23 | 195 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQSKSKSVNQ LESEPPNMQQ TSSFSEPWWR SIGYNHISPP AAGGNVSNST SLECTNGASE 60 SNDGQSMSND DLNEEDDDET TKDSHASFGQ VQHNCQHAVS AAPIVHSGCI TQPPQLELAC 120 ASNPYQDPYY AGVMAAYGHQ PGYPPFLGMP HARMALPLEV TQEPVFVNAK QYQGILRRRQ 180 ARAKAEVENK LIKVRKPYLH ESRHQHAMRR ARGSGGRFAK KNETNSLGST MKDKDSGSGQ 240 AISSHSAGSS GSDAAPCALA ETWNSSNGQQ ESRTQLHEAY EARSYMNGSS QFHNYSSFQA 300 SSYGLRSGER GDDGDCSGQQ RSISENQAAQ RRLAIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-20 | 161 | 226 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 0.0 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657643.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
Refseq | XP_011657644.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
Swissprot | Q9LXV5 | 9e-71 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A0A0KEL9 | 0.0 | A0A0A0KEL9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156306.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 3e-69 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.124180.2 |
Entrez Gene | 101212961 |
Publications ? help Back to Top | |||
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