PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124180.1
Common NameCsa_6G439960, LOC101212961
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 342aa    MW: 37097.4 Da    PI: 7.0284
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.7e-32167223158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+RgsgGrF
  Cucsa.124180.1 167 QEPVFVNAKQYQGILRRRQARAKAEVENKL-IKVRKPYLHESRHQHAMRRARGSGGRF 223
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-35165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.157166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-28168223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-23169191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-23200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQSKSKSVNQ LESEPPNMQQ TSSFSEPWWR SIGYNHISPP AAGGNVSNST SLECTNGASE  60
SNDGQSMSND DLNEEDDDET TKDSHASFGQ VQHNCQHAVS AAPIVHSGCI TQPPQLELVG  120
HSIACASNPY QDPYYAGVMA AYGHQPGYPP FLGMPHARMA LPLEVTQEPV FVNAKQYQGI  180
LRRRQARAKA EVENKLIKVR KPYLHESRHQ HAMRRARGSG GRFAKKNETN SLGSTMKDKD  240
SGSGQAISSH SAGSSGSDAA PCALAETWNS SNGQQESRTQ LHEAYEARSY MNGSSQFHNY  300
SSFQASSYGL RSGERGDDGD CSGQQRSISE NQAAQRRLAI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-20166231166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657641.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_011657642.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
SwissprotQ9LXV52e-74NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0A0KEL90.0A0A0A0KEL9_CUCSA; Uncharacterized protein
STRINGXP_004156306.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.46e-73nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]