PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.121900.1 | ||||||||
Common Name | Csa_1G042780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WOX | ||||||||
Protein Properties | Length: 368aa MW: 41402.7 Da PI: 5.6358 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.2e-22 | 80 | 139 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Cucsa.121900.1 80 SRWNPTPEQLRVLEELYRRgTRTPSADQIQHITSQLrrygKIEGKNVFYWFQNHKARERQ 139 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.3 | 7e-38 | 79 | 141 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+++Leely++G+rtP++++iq+it++L++yGkie+kNVfyWFQN+kaRerqk+ Cucsa.121900.1 79 SSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKR 141 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.3E-5 | 77 | 144 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-13 | 79 | 145 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-19 | 80 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-9 | 80 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.51E-6 | 81 | 141 | No hit | No description |
PROSITE profile | PS50071 | 11.046 | 85 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MWMMGYNDAQ DLNFPSDNSF NSRKLRPLIP RPLSSSSSSS HTNDFFSQFH HMATSVADQS 60 KRELNNVLSP SSSPPVVVSS RWNPTPEQLR VLEELYRRGT RTPSADQIQH ITSQLRRYGK 120 IEGKNVFYWF QNHKARERQK RRRQMESSAI TTADHSTRDL DVLERKDSGS GRTVYEEQTK 180 NWVPSTNCST LPEESVPIQG AAKGNVMGAT DCRTENGWIQ FEELHQIRNN NTNTNNFAEK 240 DTNNIIINNN NNNINSPPSL QLLHCFPATA ALRGGSQLMM NIAPITTTAT VTTIMHPKCH 300 RRSNINVISG NFDVIGVEEE LEDEEEEEEE EAECGESETL QLFPLCSDRR NGGEIVGGKN 360 NNGCETN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660351.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 1 | ||||
Swissprot | Q6X7K0 | 4e-60 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A0A0LVV6 | 0.0 | A0A0A0LVV6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137626.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-45 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.121900.1 |
Publications ? help Back to Top | |||
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