PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.120600.1
Common NameCsa_6G109640, LOC101214718
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 755aa    MW: 81829.9 Da    PI: 6.2883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.120600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.41.9e-1053907533374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L++++e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL+  l++ +++ ++  +ps+ +    + ++aa+k fsevsP+l+f+++
  Cucsa.120600.1 390 DQLFKAVELIETGNSVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQLLLQNPSNHPSSNPNPSPFT---IIFKIAAYKSFSEVSPVLQFANF 481
                     79************************998*************************999999999999998...*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     t Nqa+lea++g +r+HiiDfdi++G+QW++L+q+La R+    +gpp lRiT+++s ++++  el  t+e+L++fA+ l++ fe +v+ ++ l+
  Cucsa.120600.1 482 TSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALRSsttgGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLN 576
                     ****************************************999889*************99***************************8555554 PP

            GRAS 188 dl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +   +  L+v+++Ea+aVnl +   ++++ s+sl+     +L++vk+l+Pk+vv v++ +++ +++F +r+++al+ ysal++s+ea    + ++
  Cucsa.120600.1 577 SGsWPLPLNVSENEAIAVNLPV--GSFFNYSLSLPM----ILRFVKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAV-TVNMDT 664
                     442355689999*********9..566666899988....*********************************************776.46789* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + k+Er l+++ i++vv++ +++    +e+++ W++ + ++GF p+++s+++++qa++ll++++++g+++++++ slvl+W++++Lvs+SaWr
  Cucsa.120600.1 665 QLKIERYLVQPCIEKVVTNPQSS----NERAAPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWR 753
                     ********************999....99999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.839362733IPR005202Transcription factor GRAS
PfamPF035146.7E-103390753IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MKAMPLPFPF DELRPNGVLN FTSVSDSSPP QPPTSTTLLR RHNHWSCTDN TNLLKEICYV  60
GAAEPTSVLD TRRSPSPPTS TSTLSSSLGG CGGGGGGTAS TDTTVAAPPS SLPENPSPLD  120
KCGGGGSLGI DDWESVLPES PGQGPSILGL IMGDVEDPSL GLNKLLQSGG GGGGGGGGSH  180
LDLEFSAGFT AVDHGLVFEP NSLSGESIVD PSLQGPSCSD FHNARLAAAV SNSNAMFSGV  240
FQNQNQMVEG VDEKPQIFSS SQVVMNQNQA QFTQNPALFM PLPYASPVQE HHQNHHHHLL  300
GGAPPAKRFN SGSIGPNYPV KSPFLDSGQE NFSRRQQQQQ QPHQVQLFPH HSHHHNVPQQ  360
QQRPSMAALA KQKMVNEDIA NQQLQQGISD QLFKAVELIE TGNSVLAQGI LARLNHQLSS  420
PIGKPFQRAA FYFKEALQLL LQNPSNHPSS NPNPSPFTII FKIAAYKSFS EVSPVLQFAN  480
FTSNQALLEA FNGFDRIHII DFDIGYGGQW ASLMQELALR SSTTGGGPPF LRITAFASTS  540
THDDFELGFT QENLKNFAND LNIGFELEVV NVECLNSGSW PLPLNVSENE AIAVNLPVGS  600
FFNYSLSLPM ILRFVKHLNP KIVVSVDRGC SRMDAPFPHR VINALHSYSA LLESMEAVTV  660
NMDTQLKIER YLVQPCIEKV VTNPQSSNER AAPWKSVFLS SGFCPLTFSN FTESQAECLL  720
QRTPVQGFHI DKRHSSLVLC WHRKELVSIS AWRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3541775247378Protein SCARECROW
5b3h_A4e-3541775246377Protein SCARECROW
5b3h_D4e-3541775246377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167178SGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140608.20.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A0A0KAR40.0A0A0A0KAR4_CUCSA; Uncharacterized protein
STRINGXP_004163758.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-146GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]