PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.120160.1 | ||||||||
Common Name | Csa_6G113560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 45466.6 Da PI: 4.9279 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.2e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ +++++ +C+++ +lC +C + H+ Ht++ Cucsa.120160.1 4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 18.2 | 5.3e-06 | 47 | 90 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++ ++ + C + ++ lC++C ++H + H++++ Cucsa.120160.1 47 LCERCHLQPSTVRCIEERVSLCQNCDWTGHGSstlasssHKRQT 90 7*****************************54888888898776 PP | |||||||
3 | CCT | 60 | 8e-21 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ Cucsa.120160.1 358 RNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 401 999**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.03E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00372 | 47 | 91 | No hit | No description |
PROSITE profile | PS51017 | 15.17 | 358 | 400 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.9E-16 | 358 | 400 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGFMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPSTVRC 60 IEERVSLCQN CDWTGHGSST LASSSHKRQT INCYSGCPSA AELSCIWSFV LDVPSVNDAC 120 EKELGLMSIA ETDLTGAWSP SENNAGQRMP GSTEASDVCS REKSNVLVGS SSLIGSRPHT 180 SDQPVELDNV ALPKFCCPGT KVAEFCGEDD DLYKEFDMDE MDLNLENYED LFSMSLNHSE 240 EFFENGGIDS FFEAKGLSFE DSVSHSAVVA EGSSMGVVQQ MQPAYSNGAS ADSVMSTKTE 300 PILCFNSRQA QSGMSFSGLT GESSAGDHQD CGASSMLLMG EPPWCAPGTE SSFPSTDRNS 360 AVQRYKEKKK TRKFEKTVRY ATRKARADVR RRVKGRFVKA GEAYDYDPLN QARSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681917 | 0.0 | LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139988.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-143 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0A0KCQ6 | 0.0 | A0A0A0KCQ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154511.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-124 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.120160.1 |
Publications ? help Back to Top | |||
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