PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.118910.1

Common Name

Csa_6G133670, LOC101205896

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 561aa MW: 63431.1 Da PI: 7.6107

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.118910.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.5e-10	509	557	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ E++ l av+++G+g+Wk+I + Rt+ ++k++w++ Cucsa.118910.1 509 KKWSLLEEDTLRTAVQRFGKGNWKLILSSYRdifDERTEVDLKDKWRNM 557 58******************************99*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.827	500	560	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	506	559	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-7	507	560	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-9	509	557	IPR001005	SANT/Myb domain
CDD	cd11660	9.32E-17	509	559	No hit	No description
SuperFamily	SSF46689	2.89E-13	510	559	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009901	Biological Process	anther dehiscence
GO:0010152	Biological Process	pollen maturation
GO:0043067	Biological Process	regulation of programmed cell death
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MDGDICRWII EFILRTPMDR HLQKKVLAIV PISDKDFRLT KTVLLGSIES EIFEAVATEK 60 LLQTFECIEQ LDKAEGLAIM ESMKAAYCAV AVECTVKFLL VEGIQKDGRY CDAVSRIWSG 120 RVTNLERSGK SKLVSRELKA WKDEFELSLC DKNVRLKLVH MNTRYDALKL TRDYLTEAWA 180 VIGPSFIQLS ASLMDKRVVN EMQSIQLEKG KNEIATESEV LGGSDEIELP SQSENCARLE 240 RQGGGEVLSQ PETRTDLLNR RQDLSTNEGS KQPAIVARTT ERVQELAAET AEGEELVEKE 300 VAVFHYSSPR RGENVRTSAV PRCKSLAFHR RVRGGAKISQ LEDLENENDV SFRRYTCLAT 360 PEVNRVREAL KASSLELQAV VSDPLPNALR IAESVANTLA ENKKTCEHSS EGRNDAGSSN 420 PTINKYAVPL QSVSANLKNL GNGRKTIFPR PSLMEHNSTA CTYEWNDSID DLPEGSNGNR 480 LHLPSPKRKD ISPLKKYEET KVVRRRQCKK WSLLEEDTLR TAVQRFGKGN WKLILSSYRD 540 IFDERTEVDL KDKWRNMTRY *

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MDGDICRWII EFILRTPMDR HLQKKVLAIV PISDKDFRLT KTVLLGSIES EIFEAVATEK  60
LLQTFECIEQ LDKAEGLAIM ESMKAAYCAV AVECTVKFLL VEGIQKDGRY CDAVSRIWSG  120
RVTNLERSGK SKLVSRELKA WKDEFELSLC DKNVRLKLVH MNTRYDALKL TRDYLTEAWA  180
VIGPSFIQLS ASLMDKRVVN EMQSIQLEKG KNEIATESEV LGGSDEIELP SQSENCARLE  240
RQGGGEVLSQ PETRTDLLNR RQDLSTNEGS KQPAIVARTT ERVQELAAET AEGEELVEKE  300
VAVFHYSSPR RGENVRTSAV PRCKSLAFHR RVRGGAKISQ LEDLENENDV SFRRYTCLAT  360
PEVNRVREAL KASSLELQAV VSDPLPNALR IAESVANTLA ENKKTCEHSS EGRNDAGSSN  420
PTINKYAVPL QSVSANLKNL GNGRKTIFPR PSLMEHNSTA CTYEWNDSID DLPEGSNGNR  480
LHLPSPKRKD ISPLKKYEET KVVRRRQCKK WSLLEEDTLR TAVQRFGKGN WKLILSSYRD  540
IFDERTEVDL KDKWRNMTRY *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00052	PBM	Transfer from AT1G15720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681920	0.0	LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656959.1	0.0	PREDICTED: uncharacterized protein LOC101205896 isoform X1
TrEMBL	A0A0A0KB50	0.0	A0A0A0KB50_CUCSA; Uncharacterized protein
STRING	XP_004166350.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2824	32	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	9e-21	TRF-like 5

Link Out ? help Back to Top
Phytozome	Cucsa.118910.1
Entrez Gene	101205896

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]