PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.118370.1 | ||||||||
Common Name | Csa_6G139130, LOC101220394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19085.7 Da PI: 7.8411 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.2 | 9.1e-46 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la Cucsa.118370.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLA 109 7********************************************************************************************** PP DUF260 96 llkee 100 +++e Cucsa.118370.1 110 IAQAE 114 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.39 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-45 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MKEISGRKQG TSLSPCAACK LLRRRCAQDC VFAPYFPADE PHKFASVHKV FGASNVNKML 60 QELPEQQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDLLQTQLAI AQAEVVHMRM 120 RHFPSSSYNP TAGHSPETAS PSSKMNIPAP NKSYFSMDMV DHDSMGETLW SSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN683706 | 1e-152 | LN683706.1 Cucumis melo genomic scaffold, unassembled_sequence31212. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150042.1 | 1e-128 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 4e-70 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0A0KBA8 | 1e-127 | A0A0A0KBA8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150042.1 | 1e-128 | (Cucumis sativus) | ||||
STRING | XP_004161659.1 | 1e-128 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 7e-63 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.118370.1 |
Entrez Gene | 101220394 |
Publications ? help Back to Top | |||
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