PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.117770.1
Common NameCsa_1G523610, LOC101217374
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 656aa    MW: 74372.4 Da    PI: 6.4057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.117770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.15.4e-1092886423360
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla+yf+++L++rla  ++ ly  ++++ets    +e l+a+++f +++P+ ++s++ 
  Cucsa.117770.1 288 TLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAA-GTPLYLPFASNETS---AAEILKAYQMFIKACPFRRMSYFY 378
                     69**************************************************9.99999777777777...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++Il+ +e+ +++Hi+Df++ +GlQWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++e+tg+rLa+++++++vpfe +v +a+++e+++
  Cucsa.117770.1 379 GNRTILKLAEKVTTLHIVDFGLLYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEHKV-LAQKWETVR 472
                     *******************************************************9****************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+v+++E ++V +++++++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r   
  Cucsa.117770.1 473 YEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLC 567
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                     E+e+lgr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++  k ++ ++++ + + ++++++  ++++
  Cucsa.117770.1 568 EKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKCVEKIVNTEYHQDFNIDQDGSWMLQ 642
                     **********************************************************99888*****9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.923260636IPR005202Transcription factor GRAS
PfamPF035141.9E-106288642IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
NRDAVDPLQI PAKSHQHQLQ HHQLTNNSSS SPSSSSSEGD SPDSHDTSNT MLKYITEMLM  60
DEAEDLKTQP CMLLDCLALQ AAEKSFYDVL GQKYPPSPTA DSSSCDRALG GEDESESFNG  120
NSNSSLFHPF QNSVLSQDSF LGMQFLGHFR QGAEEASKFL PVNGRFGTIA LDNDSSSSTS  180
FPSRPVDFSW VAAENDEKKN RLREDSDEEL RSSKQSANFV DDNSLSDLFD EVLLCRGESR  240
QSPPSCGSDE SSESEANKKS RGRGKRKGKK SSRSRKQENS VEVVDLWTLL TQCAQAVSNY  300
DQRTANELLN QIRQHSNPSG DGNQRLAHYF AKGLETRLAA GTPLYLPFAS NETSAAEILK  360
AYQMFIKACP FRRMSYFYGN RTILKLAEKV TTLHIVDFGL LYGLQWPCLI QRLSRRPGGP  420
PKLRITGIEL PQPGFRPAER VEQTGRRLAH YCKRFNVPFE HKVLAQKWET VRYEDLNVDR  480
DELTIVTCMF RMKNVPDETV VANSPRDRVL KLIRKINPDL FIHEVTNGSF NTPFFNTRFK  540
EALFYYSSLF DMYEATVPRD NPQRFLCEKE ILGRDIMNVI ACEGLERVER PETYKQWQVR  600
NTRAGFKQVP LDQDLLKCVE KIVNTEYHQD FNIDQDGSWM LQGLIVGILY IKFGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-452906118328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145288.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A0A0LY260.0A0A0A0LY26_CUCSA; Uncharacterized protein
STRINGXP_004145288.10.0(Cucumis sativus)
STRINGXP_004153085.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-164GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]