PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.117650.1 | ||||||||
Common Name | Csa_1G524710, LOC101207597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21273.7 Da PI: 5.6457 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Cucsa.117650.1 28 YECNFCKRGFTNAQALGGHMNIH 50 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-7 | 26 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 26 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.03 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEIDQQEDAS CEYQEEQSGV NQSTVRSYEC NFCKRGFTNA QALGGHMNIH RKEKAKLKQS 60 ITTSSLSSSP NKMVVDTPKM MSTPTRLPWV VISPSTRKEH GRSKGGLEET LISEEFQQLP 120 LFVENNPSNM DQNLEIRQVL PIDVDCDSKL GSPSRHGSSV SELDLELRLG PEPQNSTSSS 180 SLPTGRTTHF F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681926 | 0.0 | LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145329.1 | 1e-141 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A0A0LXG2 | 1e-139 | A0A0A0LXG2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145329.1 | 1e-140 | (Cucumis sativus) | ||||
STRING | XP_004153148.1 | 1e-140 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 6e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.117650.1 |
Entrez Gene | 101207597 |
Publications ? help Back to Top | |||
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