PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.117300.1

Common Name

Csa_2G000170, LOC101214722

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 320aa MW: 36812.8 Da PI: 9.0386

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.117300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6.1e-25	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+ Cucsa.117300.1 79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 123 79****************************************985 PP
2	QLQ	60.8	3.7e-21	8	42	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+q+L++Q+l++Ky+++++P+PpeLl i+ Cucsa.117300.1 8 PFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIK 42 8*****************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.6E-13	7	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.6E-16	8	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.009	8	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.918	79	123	IPR014977	WRC domain
Pfam	PF08879	1.0E-20	80	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSARNRFPFT AAQWQELEHQ ALIFKYMVSG VPIPPELLYS IKATSLDTPF ISRLFPHQYP 60 QVSAVGWNYL QMGSGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSRKP 120 VEQVLKTTPL NSSNPSTPAI SSITHNSETH PHPHPHPFHY QNPSASSHPS LLPDYRRNRY 180 IYGEKEENSF VREQHSGNMR GFSGSSMDDS WQLTPLTMSC SSSSSRYKNC SALQGDYSSY 240 LQLQSFEKYN EMQSKMDRDQ EPQKTVHHFF DEWSPKHRES WDDLDDKSSN TGSVSATRLS 300 MSTPNTDSSI FSFNKRNEN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141176.1	0.0	PREDICTED: growth-regulating factor 5 isoform X1
TrEMBL	A0A0A0LFP9	0.0	A0A0A0LFP9_CUCSA; Uncharacterized protein
STRING	XP_004157965.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4043	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-57	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Cucsa.117300.1
Entrez Gene	101214722

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]