PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.116800.1

Common Name

Csa_2G000690, LOC101211827

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 440aa MW: 48617.4 Da PI: 7.5812

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.116800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.1	3e-35	52	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Cucsa.116800.1 52 LPAGVKFDPTDQELI-EHLEAKVEAKHdmkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdfqg 144 799**********.99***9976665443333333766646******.555666799**************8677777777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Cucsa.116800.1 145 gggGGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 199 66644778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-38	47	218	IPR003441	NAC domain
PROSITE profile	PS51005	32.218	52	218	IPR003441	NAC domain
Pfam	PF02365	7.3E-16	53	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MTTSMASTKS NLGSITSSDL IDAKLEEHQK CGSKQCPGCG HKLEAKPDWL GLPAGVKFDP 60 TDQELIEHLE AKVEAKHDMK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH 120 RPSKAYTTGT RKRRKIQTEC DFQGGGGGGE TRWHKTGKTR PVMVNGRQKG CKKILVLYTN 180 FGKNRKPEKT NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCSWSSSD KPVSVGVSPE 240 LSGDNLVLSS RRESGSGSCS SSREITTGQR DEMSSVGGGG LCPPPHIAAA ATYAGLDHIQ 300 QFKADHFSFG PYRRTFDESG IGEASTAREA PPTEDIGDHR NHHHHHLQRQ HHHPMVTTAF 360 QITRPSNPIS TIICPPPLHH SSIILDHDAY RVSPLMLQSE SFQQQQQEQH HKLGGRSASG 420 LEELIMGCTS SNIKESHSG*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MTTSMASTKS NLGSITSSDL IDAKLEEHQK CGSKQCPGCG HKLEAKPDWL GLPAGVKFDP  60
TDQELIEHLE AKVEAKHDMK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH  120
RPSKAYTTGT RKRRKIQTEC DFQGGGGGGE TRWHKTGKTR PVMVNGRQKG CKKILVLYTN  180
FGKNRKPEKT NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCSWSSSD KPVSVGVSPE  240
LSGDNLVLSS RRESGSGSCS SSREITTGQR DEMSSVGGGG LCPPPHIAAA ATYAGLDHIQ  300
QFKADHFSFG PYRRTFDESG IGEASTAREA PPTEDIGDHR NHHHHHLQRQ HHHPMVTTAF  360
QITRPSNPIS TIICPPPLHH SSIILDHDAY RVSPLMLQSE SFQQQQQEQH HKLGGRSASG  420
LEELIMGCTS SNIKESHSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648623.1	0.0	PREDICTED: NAC domain-containing protein 72-like isoform X1
Swissprot	Q9M0F8	1e-164	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0A0LKQ0	0.0	A0A0A0LKQ0_CUCSA; Uncharacterized protein
STRING	XP_004141164.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Cucsa.116800.1
Entrez Gene	101211827

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]