PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.116430.1 | ||||||||
Common Name | Csa_2G003600, LOC101211978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CPP | ||||||||
Protein Properties | Length: 589aa MW: 62852.2 Da PI: 7.7408 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.1 | 4.1e-14 | 118 | 157 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C N+ e+ Cucsa.116430.1 118 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 157 89**************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 202 | 241 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Cucsa.116430.1 202 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 241 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.4E-16 | 117 | 157 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.57 | 118 | 242 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.5E-11 | 119 | 154 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 202 | 243 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 205 | 240 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MGEEDSVGAS QKKAQSDGAT LSNSSSSDIP SKKLARQLDF TGYGGASNTQ SHSSSHSQSQ 60 ASLVAQNLPQ AQPKPQTQMV AASIAPLAPL SSVRAVKPES PMSRARPAIE AKDSTPKKQK 120 QCNCKHSRCL KLYCECFASG IYCDGCNCIN CYNNVENDAA RREAVEATLE RNPNAFRPKI 180 ASSPHGMRDS REEAGELLML GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF 240 EGSEERQALF HGDHGSNMTF IQQAANAAIT GAIGSSGYAS PPVSKKRKGQ ELYFGPTAKD 300 ISAHRPGPFQ QANHIRATAP PLPSFPIAGV GSPSVLGPSK FTYRSLMADI IQSQDLKDLC 360 SVLVVLSSEA AKTIQDQTSA TEKQSDGQTE TSVASSTQDG QKKDASDEKS AADDRSSANQ 420 ADKITPDDSN SDGGDVPKGA PMSPGTLALM CDEQDTMLMA AASPNRLMGP GCSTSSQLPH 480 GQDTSEIYAE QERIVLTKFR DCLNRLITLG EIKETKCSSL ARSEVGNQEQ QFNNGTTNSK 540 TDTQSNLGQL NNKVTKPSIT PSVKTSQTVT PAVMTLSNDQ RQKVLPLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-32 | 110 | 251 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 6e-32 | 110 | 251 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011648652.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0A0LFV2 | 0.0 | A0A0A0LFV2_CUCSA; Uncharacterized protein | ||||
STRING | XP_008458475.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.116430.1 |
Entrez Gene | 101211978 |
Publications ? help Back to Top | |||
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