PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.116430.1
Common NameCsa_2G003600, LOC101211978
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 589aa    MW: 62852.2 Da    PI: 7.7408
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.116430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.14.1e-14118157242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  Cucsa.116430.1 118 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 157
                     89**************************.********9875 PP

2TCR50.93.1e-16202241140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Cucsa.116430.1 202 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 241
                     589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-16117157IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.57118242IPR005172CRC domain
PfamPF036383.5E-11119154IPR005172CRC domain
SMARTSM011148.4E-20202243IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12205240IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MGEEDSVGAS QKKAQSDGAT LSNSSSSDIP SKKLARQLDF TGYGGASNTQ SHSSSHSQSQ  60
ASLVAQNLPQ AQPKPQTQMV AASIAPLAPL SSVRAVKPES PMSRARPAIE AKDSTPKKQK  120
QCNCKHSRCL KLYCECFASG IYCDGCNCIN CYNNVENDAA RREAVEATLE RNPNAFRPKI  180
ASSPHGMRDS REEAGELLML GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF  240
EGSEERQALF HGDHGSNMTF IQQAANAAIT GAIGSSGYAS PPVSKKRKGQ ELYFGPTAKD  300
ISAHRPGPFQ QANHIRATAP PLPSFPIAGV GSPSVLGPSK FTYRSLMADI IQSQDLKDLC  360
SVLVVLSSEA AKTIQDQTSA TEKQSDGQTE TSVASSTQDG QKKDASDEKS AADDRSSANQ  420
ADKITPDDSN SDGGDVPKGA PMSPGTLALM CDEQDTMLMA AASPNRLMGP GCSTSSQLPH  480
GQDTSEIYAE QERIVLTKFR DCLNRLITLG EIKETKCSSL ARSEVGNQEQ QFNNGTTNSK  540
TDTQSNLGQL NNKVTKPSIT PSVKTSQTVT PAVMTLSNDQ RQKVLPLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-321102512132Protein lin-54 homolog
5fd3_B6e-321102512132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648652.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0A0LFV20.0A0A0A0LFV2_CUCSA; Uncharacterized protein
STRINGXP_008458475.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]