PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.116340.1
Common NameCsa_2G004690, LOC101211247
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 305aa    MW: 34247.7 Da    PI: 6.5341
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.116340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.6e-35131052103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+ye+++d+++++li ws+ +nsfvv d+ e+++++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+ ++F +g+k+ll++
  Cucsa.116340.1  13 FVMKTYEMVNDPSTDDLIGWSKGNNSFVVADPLELSRRILPSYFKHNNFSSFVRQLNTYGFKKVDPDQ---------WEFASQWFLRGQKHLLKN 98 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r++++
  Cucsa.116340.1  99 ICRRRHS 105
                     **99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-509102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.4E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.2E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MESNQQNDAV APFVMKTYEM VNDPSTDDLI GWSKGNNSFV VADPLELSRR ILPSYFKHNN  60
FSSFVRQLNT YGFKKVDPDQ WEFASQWFLR GQKHLLKNIC RRRHSRNSYF QTKYADDDGE  120
LAIEISKLKR EQRALELEVE SMNKRIEATE KRPQQMMAFL YKIMDNPEIL PRIIIQNHRV  180
RRQLPSKRRR VVMPPPPSPT TVKVDKIPDD DSSPETGVFV DNASLSSPET TLWWDGAASA  240
PVSSPLTSDS GGGLSDYISL SPPESDVSMY GIGGVGDCYM AELVAGGGSR PPPPYPFSLF  300
SGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-241010226129Heat shock factor protein 1
5d5v_B6e-241010226129Heat shock factor protein 1
5d5v_D6e-241010226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186190KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139432.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-81HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0A0LHY00.0A0A0A0LHY0_CUCSA; Uncharacterized protein
STRINGXP_004139432.10.0(Cucumis sativus)
STRINGXP_004167316.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-82heat shock transcription factor C1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]