PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.116140.1

Common Name

Csa_2G005920, LOC101209032

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 451aa MW: 49150.6 Da PI: 7.2804

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.116140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.7e-32	238	293	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cucsa.116140.1 238 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 293 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.355	235	295	IPR017930	Myb domain
SuperFamily	SSF46689	5.02E-17	235	296	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	236	296	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-26	238	293	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-7	240	291	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MQLLTNALET SRQQLQGCRS VNSNNNNDEN DHQNSQKPIL EEFIPLKQTT SESSDQTLSN 60 NISDKANWMT SAQLWSQTNS NSTNIIDETK PINLSSSKQQ QQQPIVDHHH HHHHHHHQIG 120 LIPKLQRNNN SNQNNGGAFL PFSKDRILHN STSSNSSHLP DLALAATTAA DFGDNDGNKC 180 GNSDHHLPEK GNLVTGKVNL GGEGQIITNS NTTNNNNSTV VVNNNNNTTN STNQTHRKAR 240 RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS 300 PQAAGAPAPQ LVVGIWVPPE YATAAAHGGA AALYGPHPTT YCAPPVHQDF YPPPPLPHHQ 360 LHHQHALHQQ LHMYKAAATA QAHSSPESDG RGNGDRSESI EDGGKSESGS WKVESGGENN 420 GGTGERKGNL AALRQETGDE SNGSEITLKF *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MQLLTNALET SRQQLQGCRS VNSNNNNDEN DHQNSQKPIL EEFIPLKQTT SESSDQTLSN  60
NISDKANWMT SAQLWSQTNS NSTNIIDETK PINLSSSKQQ QQQPIVDHHH HHHHHHHQIG  120
LIPKLQRNNN SNQNNGGAFL PFSKDRILHN STSSNSSHLP DLALAATTAA DFGDNDGNKC  180
GNSDHHLPEK GNLVTGKVNL GGEGQIITNS NTTNNNNSTV VVNNNNNTTN STNQTHRKAR  240
RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS  300
PQAAGAPAPQ LVVGIWVPPE YATAAAHGGA AALYGPHPTT YCAPPVHQDF YPPPPLPHHQ  360
LHHQHALHQQ LHMYKAAATA QAHSSPESDG RGNGDRSESI EDGGKSESGS WKVESGGENN  420
GGTGERKGNL AALRQETGDE SNGSEITLKF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-14	238	291	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648670.1	0.0	PREDICTED: homeobox protein 5
TrEMBL	A0A0A0LKW2	0.0	A0A0A0LKW2_CUCSA; Uncharacterized protein
STRING	XP_004139423.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	6e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.116140.1
Entrez Gene	101209032

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]