PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.115490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 32665.7 Da    PI: 9.8276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.115490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.4e-3173123151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++ rqvtfskRrng+lKKA+ELSvLCdaev+viifs++g+lye+ss
  Cucsa.115490.1  73 KRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSS 123
                     79***********************************************96 PP

2K-box55.52.4e-19146235998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +e  +++l+qe++   k+ie+L+++q +llG +L+s+s++e++++e+qL  sl++iR++K +l++eq e+l +k k l een +L++k 
  Cucsa.115490.1 146 RSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKC 235
                     6677899*******************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-4165124IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.56265125IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-316787IPR002100Transcription factor, MADS-box
PROSITE patternPS00350067121IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-3367139IPR002100Transcription factor, MADS-box
CDDcd002657.91E-4367142No hitNo description
PfamPF003191.5E-2674121IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-3187102IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-31102123IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.998151241IPR002487Transcription factor, K-box
PfamPF014864.4E-19152235IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLLLVLRVRL RNGDRFPFLP LLGFLLSSSH FHTIIFSFFF FFFFTLHSSI ILYKTPWDKF  60
GKNDMVRGKV EMKRIENSTS RQVTFSKRRN GLLKKAYELS VLCDAEVSVI IFSQKGRLYE  120
FSSSDMQKTI ERYRKHGKDG QSNPFRSEGY MQQLKQEAEM TAKKIEQLEK SQQKLLGRGL  180
DSCSFEEIRE IERQLVLSLT RIRETKAQLF KEQKEKLIEK GKLLLEENLK LSAKCGTKPW  240
QEEGVEGDGG INMMSNLCSQ STNSQASDHH MQTDLFIGLS CS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-1967142277MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-1967142277MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-1967142277MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-1967142277MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P4e-1965142178Myocyte-specific enhancer factor 2B
1tqe_Q4e-1965142178Myocyte-specific enhancer factor 2B
1tqe_R4e-1965142178Myocyte-specific enhancer factor 2B
1tqe_S4e-1965142178Myocyte-specific enhancer factor 2B
5f28_A4e-1965142178MEF2C
5f28_B4e-1965142178MEF2C
5f28_C4e-1965142178MEF2C
5f28_D4e-1965142178MEF2C
6c9l_A4e-1965142178Myocyte-specific enhancer factor 2B
6c9l_B4e-1965142178Myocyte-specific enhancer factor 2B
6c9l_C4e-1965142178Myocyte-specific enhancer factor 2B
6c9l_D4e-1965142178Myocyte-specific enhancer factor 2B
6c9l_E4e-1965142178Myocyte-specific enhancer factor 2B
6c9l_F4e-1965142178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818953e-98LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132633e-98LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143644.11e-170PREDICTED: MADS-box protein SOC1 isoform X1
SwissprotQ9FIS12e-75AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0A0KL391e-155A0A0A0KL39_CUCSA; Uncharacterized protein
STRINGXP_004143644.11e-169(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-67AGAMOUS-like 42