PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.114750.5 | ||||||||
Common Name | Csa_4G054800, LOC101212500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 860aa MW: 94743.2 Da PI: 6.2957 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.9e-29 | 455 | 506 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Cucsa.114750.5 455 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 506 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.871 | 445 | 526 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.2E-26 | 459 | 506 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-23 | 757 | 845 | No hit | No description |
PROSITE profile | PS51745 | 25.938 | 763 | 845 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.2E-25 | 763 | 845 | IPR000270 | PB1 domain |
Pfam | PF00564 | 6.5E-19 | 764 | 844 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.5E-25 | 764 | 844 | No hit | No description |
CDD | cd06407 | 3.32E-37 | 764 | 844 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence Send to blast |
MAQALRYIKE SSDQHVLAQV WAPVKSGGKL VLSTSGQPFF LDSQSNGLHQ YRMASLTFSF 60 SLDADQDGYL GLPGRVFQQK LPEWTPNVQY YSSKEYPRLS HALNYNVQGT LALPVFDPSG 120 HSCLGVLELI MTSPKINYAP EVDKVCKALE AVNLKSSEIL DHPNNQICNE GRQNALAEIL 180 EVLTVVCETH NLPLAQTWVP CRHRNVLANG GGLKKSCTSF DGSCMGRICM SATEVASYVV 240 DAHMWGFRDA CLEHHLQKGQ GVSGRAFLSH SSCFCGDVTQ FCKTEYPLVH YALMFGLKSC 300 FSICLRSTFT GDDEYILEFF LPPSIVDYQE QKNLLGALMA TMKKHFYTLK VASGINLEDK 360 EGLVEIIQAS RNGGFDSRFE YIQIPRPVQL PPASDAMPKA VEVAALETLE QQSLMVHDAP 420 KDENNGAWDG ESHKSVPCPQ NKEVKKTSER KRGKAEKSIS LEVLQQYFAG SLKDAAKSLG 480 VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKRVIESV QGAEGAFGIS SLATSPLPVT 540 VSSSSHPLTP EGSNQQNFVA SQPSDSQYKE TNTPEAQTND TQARLEDRLH RGVLSPEEPI 600 HEQNGFLPKF GNGLNNFRTG SGSREESAGT PTSHGSCQGS PANDSALANN PISIRQHEQC 660 ARRESPEVAF HPIDKLNISA PPCSIPDTLV MVEPEEPFGG MLIEDAGSSK DLKNLCASVA 720 DAVLDEQVPE FCWSNHHDIA LRQPMDSVCH TVPHISLRQE PRRMTIKATY KEDIIRFRIP 780 LTSGIVELRE EVAKRLKLEV GTFDIKYMDD DREWVLIACD ADLQECVDIS KSSGSNIIRL 840 SVHDLNVNLG SSCESTGGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653227.1 | 0.0 | PREDICTED: protein NLP7-like isoform X2 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A0A0KX54 | 0.0 | A0A0A0KX54_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149006.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.114750.5 |
Entrez Gene | 101212500 |