PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.114750.3
Common NameCsa_4G054800, LOC101212500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Nin-like
Protein Properties Length: 994aa    MW: 109505 Da    PI: 5.7163
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.114750.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.4e-29589640152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Cucsa.114750.3 589 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 640
                     589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.871579660IPR003035RWP-RK domain
PfamPF020423.8E-26593640IPR003035RWP-RK domain
SuperFamilySSF542774.58E-23891979No hitNo description
PROSITE profilePS5174525.938897979IPR000270PB1 domain
SMARTSM006663.2E-25897979IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.8E-25898978No hitNo description
CDDcd064076.26E-37898978No hitNo description
PfamPF005647.8E-19898978IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MTEPDSDHPS PLFPKSNHRS SSDDRTPLMD FDLDLDIPWP LDQIPSFGSN PMSPFLLSTS  60
DHLASPLWAF SEADDDDDSK FAAYACSVLG TSNSHSVPQK PTENQKFKIL PVPSSSWGVL  120
PSENPDGYCL IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKLVLSTSG QPFFLDSQSN  180
GLHQYRMASL TFSFSLDADQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALNYN  240
VQGTLALPVF DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ  300
ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LANGGGLKKS CTSFDGSCMG  360
RICMSATEVA SYVVDAHMWG FRDACLEHHL QKGQGVSGRA FLSHSSCFCG DVTQFCKTEY  420
PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKNLLG ALMATMKKHF  480
YTLKVASGIN LEDKEGLVEI IQASRNGGFD SRFEYIQIPR PVQLPPASDA MPKAVEVAAL  540
ETLEQQSLMV HDAPKDENNG AWDGESHKSV PCPQNKEVKK TSERKRGKAE KSISLEVLQQ  600
YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGAEGA  660
FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDS QYKETNTPEA QTNDTQARLE  720
DRLHRGVLSP EEPIHEQNGF LPKFGNGLNN FRTGSGSREE SAGTPTSHGS CQGSPANDSA  780
LANNPISIRQ HEQCARRESP EVAFHPIDKL NISAPPCSIP DTLVMVEPEE PFGGMLIEDA  840
GSSKDLKNLC ASVADAVLDE QVPEFCWSNH HDIALRQPMD SVCHTVPHIS LRQEPRRMTI  900
KATYKEDIIR FRIPLTSGIV ELREEVAKRL KLEVGTFDIK YMDDDREWVL IACDADLQEC  960
VDISKSSGSN IIRLSVHDLN VNLGSSCEST GGE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653227.10.0PREDICTED: protein NLP7-like isoform X2
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A0A0KX540.0A0A0A0KX54_CUCSA; Uncharacterized protein
STRINGXP_008451916.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  5. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  6. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  7. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  8. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  9. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  10. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  11. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  12. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  13. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  14. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  15. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]