PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.113660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 41374.7 Da PI: 10.1967 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7.1e-39 | 85 | 236 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg...... 88 kkdrhski T++g RdRR+Rls+++a++fF Lqd+LG+dk skt+eWLl qakp+i +l+ + +++ c +++ss+ s+s+ + Cucsa.113660.1 85 SKKDRHSKITTAKGVRDRRMRLSLPVAKQFFGLQDMLGVDKGSKTVEWLLIQAKPEILKLATEKKNHN--CftiSNSSSNYSNSS---Eldnevg 174 69*************************************************************66666..543433333333332...2234667 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +++k ++k+ + k+ +ake r+kar+rar rt ek + + Cucsa.113660.1 175 viigdqnlntkdnnikiSKKKIKKKKIMRAKQLPIRKTMAKELREKARERARARTLEKLKSQ 236 77777777788888877333333344444444555689999****************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-40 | 85 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.407 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.959 | 215 | 232 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
SGNTKNVHDP FGNLSHDLDH SFHLPISFFP FPSPFEVDDD RDLNFTTNSP SNSSQNYNNN 60 PPPIISTYQK MKKMMKKVPQ RKRLSKKDRH SKITTAKGVR DRRMRLSLPV AKQFFGLQDM 120 LGVDKGSKTV EWLLIQAKPE ILKLATEKKN HNCFTISNSS SNYSNSSELD NEVGVIIGDQ 180 NLNTKDNNIK ISKKKIKKKK IMRAKQLPIR KTMAKELREK ARERARARTL EKLKSQMFIR 240 DSACCSDDHQ PNFTNINSSS SWSSPFETTG GEESAGTTTH QSNNNNNPIT SQFDSQFHQI 300 FSSFDFILPK WSPSDDSTFN FLHQQVSFEV NLLLFFLFNL NQTVYGLVAS MLQVSTTWDF 360 DS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650456.1 | 0.0 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A0A0LVQ1 | 0.0 | A0A0A0LVQ1_CUCSA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.113660.1 |