PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113420.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28177.9 Da    PI: 8.4638
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113420.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.9e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gkl+e++s
  Cucsa.113420.2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCS 59
                    79***********************************************96 PP
2K-box92.66.6e-318616917100
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +  ++ +Lk+ +e +q++qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K++ lleq+ elq+ke++l e+n+ L+kklee
  Cucsa.113420.2  86 SFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTQSLLEQLTELQRKEQMLVEDNRGLKKKLEE 169
                     557899***************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-32275IPR002100Transcription factor, MADS-box
CDDcd002652.40E-42276No hitNo description
PRINTSPR004045.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2582167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.15683173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFSN RGKLFEFCSG  60
SSMTKTLEKY RRCSYGIPNA THQPQSFDDY LNLKATVEFM QQSQRNLLGE DLGPLNAKEL  120
EQLEHQLETS LERIRSTKTQ SLLEQLTELQ RKEQMLVEDN RGLKKKLEES SAQVAVAAAG  180
AWGWEDGAGG HNMEYPSRGV ASQSDAFFHP IVQPTPTLQI GYSSIGSMGM NHIGSPSQNA  240
NNNAFHLGWM I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-218916723101Developmental protein SEPALLATA 3
4ox0_B3e-218916723101Developmental protein SEPALLATA 3
4ox0_C3e-218916723101Developmental protein SEPALLATA 3
4ox0_D3e-218916723101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819327e-96LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132667e-96LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650313.10.0PREDICTED: MADS-box protein CMB1-like isoform X2
SwissprotQ8LLR26e-97MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3BWE31e-152A0A1S3BWE3_CUCME; MADS-box protein CMB1-like isoform X3
STRINGXP_008453343.11e-150(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]