PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.112320.1 | ||||||||
Common Name | Csa_1G031750, LOC101215660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 706aa MW: 78490.9 Da PI: 6.9094 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.4e-19 | 21 | 76 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Cucsa.112320.1 21 KKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 76 6778999**********************************************998 PP | |||||||
2 | START | 178.3 | 4.6e-56 | 219 | 442 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a a++el+++ + +ep+W+ks+ + ++ +++ f++ ++ +++ea+r+sgvv+ +a lv +++d++ +W+e ++ a tl Cucsa.112320.1 219 IATNAMAELLRLSQTNEPFWMKSPtdgrDLLDLETYEHAFPRPNTplknlhFRTEASRDSGVVIISSAALVDIFMDSN-KWTELFPtivsVARTL 312 77899*******************999988888888888988888999******************************.*******9999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+ssg g lqlm++elq+lsplvp R f+f+Ry++q ++g+w++vdvS + +++++ s ++++pSg+li++++ng+skvtw+ehv Cucsa.112320.1 313 EVVSSGmlgsqnGSLQLMYQELQLLSPLVPtRHFYFIRYCQQIEQGVWAVVDVSYNIPRENQI-VSHPQCHRFPSGCLIQDMPNGYSKVTWIEHV 406 *************************************************************95.8888999************************ PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 ++++r hwl+r l++sgla+ga +w+atlqr e Cucsa.112320.1 407 EVEDRGStHWLFRDLIHSGLAFGAERWLATLQRMSE 442 *****999************************9877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 7 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-20 | 7 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 19 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.90E-18 | 20 | 79 | No hit | No description |
Pfam | PF00046 | 3.6E-17 | 21 | 76 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.338 | 209 | 446 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-35 | 212 | 444 | No hit | No description |
CDD | cd08875 | 3.02E-114 | 213 | 442 | No hit | No description |
SMART | SM00234 | 3.8E-49 | 218 | 443 | IPR002913 | START domain |
Pfam | PF01852 | 9.7E-48 | 219 | 442 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-6 | 278 | 441 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.71E-23 | 465 | 697 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 706 aa Download sequence Send to blast |
MDFGGGSGWD NDPSSDPQRR KKRYHRHNAN QIQRLEAMFK ECPHPDEKQR LQLSRELGLA 60 PRQIKFWFQN RRTQMKAQHE RADNSALRAE NDKIRCENIA IREALKNVIC PSCGGPPLQD 120 PYFDEHKLRI ENAHLKEELD RVSSIAAKYI GRPISQLPPI QPSHFSSLEL SMGSFPSQEM 180 GCPSLDLDLL SASSTSVPNL PYHHPIHLST VDKSLMTEIA TNAMAELLRL SQTNEPFWMK 240 SPTDGRDLLD LETYEHAFPR PNTPLKNLHF RTEASRDSGV VIISSAALVD IFMDSNKWTE 300 LFPTIVSVAR TLEVVSSGML GSQNGSLQLM YQELQLLSPL VPTRHFYFIR YCQQIEQGVW 360 AVVDVSYNIP RENQIVSHPQ CHRFPSGCLI QDMPNGYSKV TWIEHVEVED RGSTHWLFRD 420 LIHSGLAFGA ERWLATLQRM SERFACLMVT SSSNQDLGGV IPSLEGKRSM MKLAQRMVNN 480 FCASISTSHG HRWTTLSGMN EVGVRVTVHK STDSGQPNGV VLSAATTIWL PVSPQTIFNF 540 FKNDRTRSQW DVLSEGNPVQ EVAHISNGSH PGNCISVLRG FNTSQNNMLI LQESCIDSSG 600 SLVVYCPVDL PAMNVAMSGE DPSSIPLLPS GFTILPDGRR DQGEGASSSS DVHNRSGGSL 660 VTVAFQILVS SLPSGKLNLE SVTTVNNLIS TTVHQIKTAL NCHSS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137568.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A0A0LVB8 | 0.0 | A0A0A0LVB8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137568.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004165666.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.112320.1 |
Entrez Gene | 101215660 |