PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.111990.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 424aa    MW: 47468.3 Da    PI: 8.4722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.111990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-15287368179
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+
  Cucsa.111990.1 287 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPVKVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDT 368
                     99**************************555556677***************9989999999***9.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-24283368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-16284368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-19285368No hitNo description
PROSITE profilePS508638.839287387IPR003340B3 DNA binding domain
PfamPF023621.5E-12287368IPR003340B3 DNA binding domain
SMARTSM010197.6E-15287387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
QIIDVLTTGL PKWQFNYLID NYFLQEFEVL LASHHDVCAV IAEFLLHLPF RDKGHFWWFE  60
RIRRDEISNG FDAVTGGNVG LLRPASVKDQ VVGNGINEEK LLQLCNIMEA NEPDHFQQSQ  120
RVDRSASPTQ NRGENLRNPF GEVGSSFFNM NKIPVNCQPS VGSFTYSKLD TSRPHLELKD  180
MKESLTQPSL SITLGVPLGS AAHEDEKSIL PFQQGQRSRP IFPKLIKTGT TVNSEARKGM  240
APLVRIARPP AEGRGKNQLL PRYWPRITDQ ELEQLSGDLN STIVPLFEKV LSASDAGRIG  300
RLVLPKACAE AYFPPISQSE GLPVKVQDVK GNEWTFQFRF WPNNNSRMYV LEGVTPCIQS  360
MQLRAGDTGN LSIIPQGLNK VSALQGSSPI IDSNLLLNPT QFNMKVLVVV LIRFHKKSFF  420
TQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-602653771113B3 domain-containing transcription repressor VAL1
5yzz_C8e-602653771113B3 domain-containing transcription repressor VAL1
5z00_C8e-602653771113B3 domain-containing transcription repressor VAL1
5z00_G8e-602653771113B3 domain-containing transcription repressor VAL1
5z00_K8e-602653771113B3 domain-containing transcription repressor VAL1
5z00_M8e-602653771113B3 domain-containing transcription repressor VAL1
6j9a_A9e-602653772114B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649408.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X3
TrEMBLA0A0A0LV820.0A0A0A0LV82_CUCSA; Uncharacterized protein
STRINGXP_004137562.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-76HSI2-like 1