PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.111880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 472aa MW: 51362.6 Da PI: 7.2048 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.7 | 6.1e-36 | 91 | 250 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a ai el+++ +++s+ e+ Cucsa.111880.1 91 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIEAASDAIAELPSLsgsfpetprqlsdekmgsdgadqGFDSP-EM 184 689*************************************************************8877766666666665555444322222.12 PP TCP 74 .eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 +++ ++ ++n++++ + + +a+s++s++s+ s l+l++ rakar rarert++++ ++ Cucsa.111880.1 185 eLDGDPKKHQQNPRQQLSLARSACSSNSETSKGSGLSLSRseilVNRAKARDRARERTAKEKEREQ 250 33333333333444444555555666666666666666664444667*********8776655443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-41 | 92 | 247 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.385 | 93 | 151 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.148 | 228 | 246 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEVLDIQEQA CRFPRIGNGR NDSNKLGQKG IVQYTPDDEE DKEFSKRVAV VTSATVNPTG 60 RCEPGGIGGV GANRLHGWHH SSRIIRVARA SGGKDRHSKV WTSKGLRDRR VRLSVATAIQ 120 FYDLQDRLGF EQPSKAVEWL IEAASDAIAE LPSLSGSFPE TPRQLSDEKM GSDGADQGFD 180 SPEMELDGDP KKHQQNPRQQ LSLARSACSS NSETSKGSGL SLSRSEILVN RAKARDRARE 240 RTAKEKEREQ ESRDAHCIPN NPSFTELLTG GINNNGANNT TNRTNSASQN NVVEPNLFDK 300 ATAMDYLASS GIIAQQPSSS SSSRPGHNQS AGFSGQIFLG NPHQLPVSIP QFNISAAENT 360 QQDRLQHFSF VPDNLNDYNL NFTISAGLAG CNRGTLQSNI SPSFLPYLQR FPHLEGSNVP 420 FFIGAASPTT ATTPVQLENH HQLTPALFDG SWQLCYADGS HHSDQKGKGK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-22 | 98 | 152 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-22 | 98 | 152 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649359.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_011649361.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_011649362.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
TrEMBL | A0A1S4DV39 | 0.0 | A0A1S4DV39_CUCME; transcription factor TCP2-like | ||||
STRING | XP_008444530.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.111880.1 |