PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.110000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29250.5 Da PI: 8.2021 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 2 | 75 | 18 | 97 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p +f++ + + s tl+ ++g +W+v l rk ++++++++GW++F + +++g +vF+++g+s+f +v +f Cucsa.110000.1 2 IPETFVRMIRDE--LSAVATLTVPDGHVWRVGL--RKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSSF--CVFIF 75 999***999644..8889***************..**********************************9999..66555 PP | |||||||
2 | B3 | 54.3 | 2.4e-17 | 144 | 221 | 17 | 98 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++fr Cucsa.110000.1 144 YLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFR 221 89********866643...5***************55555..566***********************987677777777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 4.75E-16 | 1 | 76 | No hit | No description |
SMART | SM01019 | 0.0013 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-18 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.902 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-10 | 2 | 75 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-13 | 126 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.056 | 128 | 223 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-19 | 139 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 143 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-16 | 144 | 221 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.46E-18 | 144 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
RIPETFVRMI RDELSAVATL TVPDGHVWRV GLRKADNKFW FEDGWQGFLE HYSIRVGYLL 60 VFRYEGNSSF CVFIFNLNTS EINYQSAALS NNQRNNYSIQ NRIFEEMEDY DIPEAIPSNQ 120 SMNSAFKLNH VSPNKGILHS PLQYLPSCFA EKNLSGVSGF IKLQTPDGRQ WPVRCLYKVG 180 RAKLSQGWYE FCLENNLGEG DVCVFELLRM REIVLKVTMF RVIEEGGRMA NPNPASMMNP 240 PPLRSVSHIK LIRN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-38 | 119 | 224 | 33 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-38 | 119 | 224 | 33 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681914 | 0.0 | LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480291.1 | 2e-85 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
Swissprot | Q8L3W1 | 3e-47 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0D2PYW0 | 5e-84 | A0A0D2PYW0_GOSRA; Uncharacterized protein | ||||
STRING | XP_004145349.1 | 7e-84 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-49 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.110000.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|