PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.109990.2 | ||||||||
Common Name | Csa_2G237700, LOC101213202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 407aa MW: 46723.1 Da PI: 6.7855 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 35 | 108 | 16 | 95 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +p+kfa+++gg+ +tl ++g +W ++l +++++++++++GW eFvk + +++g +vF+++g+s f+ + Cucsa.109990.2 35 LKIPNKFAKKFGGD--ILDLVTLVAPNGYRWVLEL--KRHGRSMWFEDGWHEFVKHHCIQVGQLLVFRFEGNSVFN--FY 108 89*********999..5568***************..*********************************999994..44 PP | |||||||
2 | B3 | 63 | 4.7e-20 | 309 | 398 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +s+ + l +p kfae++ +g+ + ++tl+ +sg++W+v++ + + ++ lt+GW +Fv +n+Lke D++vF+l++ ++ + v+vfr Cucsa.109990.2 309 MRQSYIRRGFHLHIPSKFAEKYlKGV-WG--DITLQVSSGKQWRVRC--IREGPGTKLTRGWADFVVDNDLKEEDVCVFELINMKDIVMQVTVFR 398 66788888889***********7666.34..7***************..67777789************************98899999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.5E-9 | 20 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 20 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-19 | 29 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.20E-15 | 33 | 111 | No hit | No description |
SuperFamily | SSF101936 | 1.24E-18 | 33 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-12 | 35 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.47E-24 | 299 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-25 | 299 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.07E-22 | 303 | 398 | No hit | No description |
SMART | SM01019 | 1.7E-14 | 305 | 400 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 305 | 400 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-19 | 308 | 398 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDNSLTAMPE SNEQEGAQSF NQTSPARRAG LFYKLKIPNK FAKKFGGDIL DLVTLVAPNG 60 YRWVLELKRH GRSMWFEDGW HEFVKHHCIQ VGQLLVFRFE GNSVFNFYMF NLTAIPNGPC 120 NTSNASIEQN DGEQCPDTLG KEAEYKKLVE ILGTGSPDPS PRPSVKDLVC EFPDQQKFNG 180 SCNGTSIKNF MHWFDTENLH PLKDFDNPLK HLDKLRMQLL NSNRDIGIQF DGDELAKARE 240 NHDFQLNQSS DEREEGAMKK KLKLEPIDYY NDNEPIDEKK CGNVPHKINR MAFGVEEFKF 300 GNPFCWIVMR QSYIRRGFHL HIPSKFAEKY LKGVWGDITL QVSSGKQWRV RCIREGPGTK 360 LTRGWADFVV DNDLKEEDVC VFELINMKDI VMQVTVFRVH GDPTKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-26 | 294 | 400 | 38 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-26 | 294 | 400 | 38 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681914 | 0.0 | LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145348.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0A0LP18 | 0.0 | A0A0A0LP18_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145348.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004153258.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-50 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.109990.2 |
Entrez Gene | 101213202 |
Publications ? help Back to Top | |||
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