PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.108510.1 | ||||||||
Common Name | Csa_3G187250, LOC101205899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 79351.6 Da PI: 6.6871 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 28 | 83 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p++++r++L+++lgL+++q+k+WFqN+R++ k Cucsa.108510.1 28 KKTYHRHNPYQIQQLESFFRQCPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTK 83 688999**********************************************9987 PP | |||||||
2 | START | 135.1 | 7.8e-43 | 230 | 447 | 6 | 206 |
HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ++el+++ +ep+W+ks + +d + + ++e ++a gvv+m + +lv +ld +W ++ aet Cucsa.108510.1 230 GLEELIRLLRIDEPLWMKSLndgrYVLHRDSYEK------IfprpnhfktssARTESSKALGVVTMSAIQLVDFFLDAD-KWADLFPtiitNAET 317 57899***************54444444555555......4455555999999*******************9999999.99999999999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 i++g galqlm++++ splv+ Rdf f+R+++q + g+wvivdvS + ++ + ++R+ +lpSg+li++++ng skvtwveh Cucsa.108510.1 318 FHIIDPGmpgnrsGALQLMYQQMHIFSPLVSpRDFCFLRHCQQIEFGVWVIVDVSYEILKDCVT---SARCWRLPSGCLIQEMPNGCSKVTWVEH 409 ****************************9999************************98888775...8*************************** PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 v++++++ h l+r lv ++la ga +w+ tlqr ce+ Cucsa.108510.1 410 VEVDDKTQtHRLYRDLVFNTLAYGADRWLFTLQRMCER 447 *****9998***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 13 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-19 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.2E-17 | 28 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.40E-17 | 28 | 86 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.691 | 216 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.32E-32 | 219 | 449 | No hit | No description |
CDD | cd08875 | 1.20E-105 | 221 | 446 | No hit | No description |
SMART | SM00234 | 2.4E-29 | 225 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-35 | 230 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-10 | 245 | 261 | IPR023393 | START-like domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-10 | 333 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.0E-14 | 468 | 644 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MDIMMDGRGG YGGGSPDEQE ASNDRKGKKT YHRHNPYQIQ QLESFFRQCP HPDENQRRQL 60 SRELGLETKQ IKFWFQNKRT QTKAQNERAD NSSLRTENEK IQCENLAIRE ALRNVICPSC 120 GGPPFGEEER QRNLQKLRLE NSHLKEEHEK VSNLLAKYIG KPISQLESLL PVLGSSLDLS 180 PRSSLTQIVP SPAVDLISDP VILDGAATPY QSRGINDLEN ALMLETAATG LEELIRLLRI 240 DEPLWMKSLN DGRYVLHRDS YEKIFPRPNH FKTSSARTES SKALGVVTMS AIQLVDFFLD 300 ADKWADLFPT IITNAETFHI IDPGMPGNRS GALQLMYQQM HIFSPLVSPR DFCFLRHCQQ 360 IEFGVWVIVD VSYEILKDCV TSARCWRLPS GCLIQEMPNG CSKVTWVEHV EVDDKTQTHR 420 LYRDLVFNTL AYGADRWLFT LQRMCERLAY TFRDCAPNHE LGGVLTSPEG RRSIMKLSHR 480 MVKNFCGILS MSGKIDFPQL SEVNNSGVRI SVRISSELGQ PSGTVVSAAT SLWLPLQPET 540 IFNFFRDEKA RVQWDVLSYG NPVHEIAHIL TGVHPGNLIS IIRPFVPTEN NMLILQESCI 600 DPLGSLVIYA PIDMPAMNIA TSGQDPSEIP ILPSGFVITG DGRTHSGIGA STSATLGRPS 660 GSLLTIAFQI LVSSVSSSKQ LNVESVATVN TLISATVQRI KVALNCSCLD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681854 | 0.0 | LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140733.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 isoform X2 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A0A0L656 | 0.0 | A0A0A0L656_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140733.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.108510.1 |
Entrez Gene | 101205899 |