PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.108150.1

Common Name

Csa_3G183960, LOC101212382

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 276aa MW: 30967.9 Da PI: 8.7806

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.108150.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1e-12	30	74	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a++++ + Wk+I + +g +t q++s+ qky Cucsa.108150.1 30 RESWTEPEHDKFLEAIQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 74 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.28E-16	24	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.287	25	79	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-18	28	77	IPR006447	Myb domain, plants
SMART	SM00717	5.8E-10	29	77	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-10	30	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-6	30	70	IPR009057	Homeodomain-like
CDD	cd00167	4.52E-8	32	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MALPFETVIT SSRDDLSKRA RKPYTITKCR ESWTEPEHDK FLEAIQLFDR DWKKIEAFVG 60 SKTVIQIRSH AQKYFLKVEK SGTGEHLPPP RPKRKAAHPY PQKSSKNGVA LVTEPFQSSS 120 VEPKYNIKPD SSSTPASFIS ATAMSSRADN SIQTVNFSQG AGGLNCEITK QVIENNCSSS 180 TDHTTRARFP TKSSIEEHNS LQLRVLPDFG QVYNFIGSVF DPKASNHLKR LEQMDQIDVE 240 TVLLLMRNLA INLTSSDFED HKRVLSSYDG FMEHG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	2e-87	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	2e-87	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651185.1	0.0	PREDICTED: protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	1e-104	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A1S3AYG1	0.0	A0A1S3AYG1_CUCME; protein REVEILLE 6-like isoform X2
STRING	XP_004157187.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	2e-93	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.108150.1
Entrez Gene	101212382

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]