PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106780.1
Common NameCsa_4G047970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 385aa    MW: 43933.5 Da    PI: 6.9014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3971.2e-3067170199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++  +r++ 
  Cucsa.106780.1  67 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPlHRNQD 161
                     89****************************66677899*************************************************54345666 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     ++++ ++r+
  Cucsa.106780.1 162 RFFIDWRRR 170
                     679999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4062171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2964165IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-2465154No hitNo description
SMARTSM010191.2E-1967171IPR003340B3 DNA binding domain
PROSITE profilePS5086314.63567171IPR003340B3 DNA binding domain
PfamPF023626.7E-2867170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDFASSSSR FHHHDYYNNS NNTRIRDFDD EQQQQQQQQQ DQEMEEESCN NSNNNNCSIF  60
VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RCGKLWRFRY  120
SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHRNQ DRFFIDWRRR PPHPAVDMPF  180
HFHRHDGGTG AAQFPPPPPH HHHFQLHSQW NNNPVATPLS LQRDHVLHLP QYNNNVSLFH  240
NTYNHHHHHN RYLDGSYGGA SVFYHLRSPI APPQVESVPV VADGNGGNGG GGSGIGRTSA  300
AKTTLRLFGV DMECEVSDDE CDVATTSKAM SSSSQFHVYN GMPMPMLTPM TMQMPTSNNN  360
ISTMDFFEKG KSSMSSMSSF DFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-60611712114B3 domain-containing transcription factor NGA1
5os9_B1e-60611712114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653180.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011653181.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011653182.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827993e-65NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0A0KZM60.0A0A0A0KZM6_CUCSA; Uncharacterized protein
STRINGXP_008452034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-62B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  6. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  7. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  8. Sasnauskas G,Manakova E,LapÄ—nas K,KauneckaitÄ— K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  9. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]