PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.106780.1 | ||||||||
Common Name | Csa_4G047970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 385aa MW: 43933.5 Da PI: 6.9014 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97 | 1.2e-30 | 67 | 170 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++ +r++ Cucsa.106780.1 67 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPlHRNQD 161 89****************************66677899*************************************************54345666 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 ++++ ++r+ Cucsa.106780.1 162 RFFIDWRRR 170 679999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-40 | 62 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-29 | 64 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.92E-24 | 65 | 154 | No hit | No description |
SMART | SM01019 | 1.2E-19 | 67 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.635 | 67 | 171 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-28 | 67 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDDFASSSSR FHHHDYYNNS NNTRIRDFDD EQQQQQQQQQ DQEMEEESCN NSNNNNCSIF 60 VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RCGKLWRFRY 120 SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHRNQ DRFFIDWRRR PPHPAVDMPF 180 HFHRHDGGTG AAQFPPPPPH HHHFQLHSQW NNNPVATPLS LQRDHVLHLP QYNNNVSLFH 240 NTYNHHHHHN RYLDGSYGGA SVFYHLRSPI APPQVESVPV VADGNGGNGG GGSGIGRTSA 300 AKTTLRLFGV DMECEVSDDE CDVATTSKAM SSSSQFHVYN GMPMPMLTPM TMQMPTSNNN 360 ISTMDFFEKG KSSMSSMSSF DFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-60 | 61 | 171 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-60 | 61 | 171 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653180.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_011653181.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_011653182.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 3e-65 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0A0KZM6 | 0.0 | A0A0A0KZM6_CUCSA; Uncharacterized protein | ||||
STRING | XP_008452034.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 3e-62 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.106780.1 |