PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106670.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 219aa    MW: 24333.9 Da    PI: 7.0882
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC++C ++ H
  Cucsa.106670.1  4 LCDACEKAAAIVFCAADEAALCRSCDEKVH 33
                    7******99******************998 PP
2zf-B_box27.27.9e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Cucsa.106670.1 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHK 92
                    5799**************************99966666787 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
SMARTSM003365.1E-8147IPR000315B-box-type zinc finger
CDDcd000211.08E-5345No hitNo description
PfamPF006431.0E-5341IPR000315B-box-type zinc finger
PROSITE profilePS501199.1865196IPR000315B-box-type zinc finger
SMARTSM003365.1E-115196IPR000315B-box-type zinc finger
PfamPF006431.4E-65292IPR000315B-box-type zinc finger
CDDcd000211.32E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRTLCDACEK AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HKRYLLLRQR VEFPGDKPIN LDDPSPHSKV  120
PNEIGKVHNQ PPPHKVTVED NQQNHHRLSP VREANDDGHA ETDTKMIDLN MKPHRVHGQA  180
ANNQVQMLLL ISSFNSVQLL ICTVTLYSFE ISKMVPIS*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-170LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-170LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146516.11e-136PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM52e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0A0KUM11e-134A0A0A0KUM1_CUCSA; Uncharacterized protein
STRINGXP_004160959.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-76DBB family protein