PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.105790.1 | ||||||||
Common Name | Csa_7G432130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 16032.8 Da PI: 11.3311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 64 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++l+g Cucsa.105790.1 64 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 112 9*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-15 | 63 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-33 | 63 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.866 | 63 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 63 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 64 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 64 | 121 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.24E-15 | 64 | 120 | No hit | No description |
PRINTS | PR00367 | 4.2E-11 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MINTHPIPPL YNTFFPHSPP PDSQLDGIAA VVGRQVLFGD NRPTPTKSSS STSATAPTTG 60 QRSYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA RAYDAAARRL RGSKARTNFE 120 MPLVVPMEST SAWSTSSVEV KRNX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 63 | 119 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 1e-160 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 1e-160 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023514530.1 | 1e-54 | ethylene-responsive transcription factor ERF084 | ||||
Swissprot | Q9M8M5 | 6e-27 | ERF84_ARATH; Ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A0A0KA16 | 1e-101 | A0A0A0KA16_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158825.1 | 1e-102 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13023 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.105790.1 |
Publications ? help Back to Top | |||
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