PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.104950.1 | ||||||||
Common Name | Csa_6G501990, LOC101216890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25661 Da PI: 8.9058 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Cucsa.104950.1 62 KRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115 56899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.4e-38 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d+++ ++++Le+e +++e+lke Cucsa.104950.1 61 KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKE 152 9****************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.649 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 59 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.95E-18 | 61 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.08E-16 | 61 | 117 | No hit | No description |
Pfam | PF00046 | 5.1E-17 | 62 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-21 | 63 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAAVNLRPDA DNSLLVSHLY NPEVYTQQVL PQQGTGEGSK PTKRRRRRSK AKEGGGAAGL 60 KKRKLSSEQV KLLEMNFGNE HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE 120 EYSTLKKAHD SVVLQKSHLE SELMKVKEQL KEAKNEIRKM VEGSEVRNNS SNSPSSSVTM 180 EAVEEAAVVP LGELFFEEYE DVFYCMQDNN YNQGLDWALN LNFM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | KRRRRR |
2 | 45 | 63 | RRRSKAKEGGGAAGLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-163 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-163 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143500.1 | 1e-164 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 3e-61 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A0A0KGE8 | 1e-162 | A0A0A0KGE8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143500.1 | 1e-163 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-49 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.104950.1 |
Entrez Gene | 101216890 |
Publications ? help Back to Top | |||
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