PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.104900.1
Common NameCsa_6G501930, LOC101216171
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BES1
Protein Properties Length: 320aa    MW: 34638.6 Da    PI: 8.8643
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.104900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822224.91.6e-6951481149
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     g+sgr+ptwkErEnnkrRERrRRaiaakiy+GLRaqGnyklpk++DnneVlkALc+eAGwvve+DGttyrkg+kp+  +  +g+sa++s +sslq
  Cucsa.104900.1   5 GSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPP--PIDIGTSANMSACSSLQ 97 
                     689*************************************************************************..8889************* PP

          DUF822  96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                      s++ss ++spv+sy+asp+sssfpsp+++d ++++    llp+l++ s+++++
  Cucsa.104900.1  98 PSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSS---YLLPFLQNISSIPAN 148
                     *********************************985...9******99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.8E-656129IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTGRGSSGRT PTWKERENNK RRERRRRAIA AKIYTGLRAQ GNYKLPKHCD NNEVLKALCN  60
EAGWVVEEDG TTYRKGCKPP PIDIGTSANM SACSSLQPSP QSSCFPSPVP SYHASPSSSS  120
FPSPTRFDGN PSSYLLPFLQ NISSIPANLP PLRISNSAPV TPPLSSPTSR GSKRKPDWES  180
IPNSYVTSFR HPLFAVSAPS SPTRCHHLTP ATIPECDESD ASTVDSGRWV SFQTVAPSVA  240
PPSPTFNLMK PVSQQNSLQD AVDRHGAMGW GATSDRGRGS EFEFEKFESG TVKPWEGERI  300
HEVGVDDLEL TLGGGKARG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-28988372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-28988372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-28988372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-28988372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143497.10.0PREDICTED: BES1/BZR1 homolog protein 2
SwissprotQ94A431e-120BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A0A0KJ100.0A0A0A0KJ10_CUCSA; Uncharacterized protein
STRINGXP_004143497.10.0(Cucumis sativus)
STRINGXP_004160145.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127534105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.24e-89BES1 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]