PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.104100.1 | ||||||||
Common Name | Csa_6G499130, LOC101204784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 27100.2 Da PI: 7.2028 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.5e-31 | 50 | 105 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +Y+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e+++ Cucsa.104100.1 50 KPKYRECLKNHAVGIGGHALDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKETDN 105 679*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 1.9E-28 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-28 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 52 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 172 | 247 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.56E-19 | 172 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-24 | 185 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDFEDQDEHE EEEMDIAAAS YDDSLPNSGT RLKIPTTTDQ IMSSSPGQRK PKYRECLKNH 60 AVGIGGHALD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KETDNNLNPA VGVGLGIGEP 120 FLLPHPGQFS PYYRTPAGYL HVAPHHRPLA LPSTSGGGGT HSREEQEDMS NPSGGGGGGS 180 SSFGKKRFRT KFTQEQKDRM LGLAETLGWR IQKHDEAVVQ QFCNDTGVKR HVLKVWMHNN 240 KHTLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 186 | 243 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143449.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 6e-81 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 6e-81 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0A0KGP3 | 0.0 | A0A0A0KGP3_CUCSA; Zinc finger homeodomain protein 1 | ||||
STRING | XP_004160918.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-66 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.104100.1 |
Entrez Gene | 101204784 |
Publications ? help Back to Top | |||
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