PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.104100.1
Common NameCsa_6G499130, LOC101204784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 249aa    MW: 27100.2 Da    PI: 7.2028
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.104100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.11.5e-3150105359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     k +Y+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e+++
  Cucsa.104100.1  50 KPKYRECLKNHAVGIGGHALDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKETDN 105
                     679*************************9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.9E-2852102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2852103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2252105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04953102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-31172247IPR009057Homeodomain-like
SuperFamilySSF466892.56E-19172246IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-24185241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFEDQDEHE EEEMDIAAAS YDDSLPNSGT RLKIPTTTDQ IMSSSPGQRK PKYRECLKNH  60
AVGIGGHALD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KETDNNLNPA VGVGLGIGEP  120
FLLPHPGQFS PYYRTPAGYL HVAPHHRPLA LPSTSGGGGT HSREEQEDMS NPSGGGGGGS  180
SSFGKKRFRT KFTQEQKDRM LGLAETLGWR IQKHDEAVVQ QFCNDTGVKR HVLKVWMHNN  240
KHTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251862431875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143449.10.0PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotA2Z2596e-81ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH56e-81ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0A0KGP30.0A0A0A0KGP3_CUCSA; Zinc finger homeodomain protein 1
STRINGXP_004160918.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-66homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]