PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.103860.1

Common Name

Csa_6G497370, LOC101206938

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 322aa MW: 34722.2 Da PI: 8.2103

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103860.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	22	81	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynnysl+qPryfCk+CrryWtkGGalrnvPvGgg+rknkk + Cucsa.103860.1 22 QHPLKCPRCDSPNTKFCYYNNYSLTQPRYFCKTCRRYWTKGGALRNVPVGGGCRKNKKLK 81 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	22	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-33	23	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MLPEKLPSGG SRQPKPISDH NQHPLKCPRC DSPNTKFCYY NNYSLTQPRY FCKTCRRYWT 60 KGGALRNVPV GGGCRKNKKL KSSSSSPSLR LPSSSNDDSG SSNSEIGRLG FFVNGFSSAQ 120 LSGNRNSSFS SAPTMGLYDQ FGGFSLDQSR SLNNSFINPS TGFVNSLNVD TSLASSIESL 180 SSMNQDLHWK LQQQRLAMLF GSGHNNTAID KNRGVSSPIA LEDHGQELNP GSFRNLEISK 240 PEACNNSSDF SNARKETVVD AGARAGGESA VADEWFFGDS YTAPSMTTTG AAAAGYNSGD 300 SAARCDGVQE WHDLHPYTHL P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143543.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
TrEMBL	A0A0A0KJW6	0.0	A0A0A0KJW6_CUCSA; Uncharacterized protein
STRING	XP_004160153.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.103860.1
Entrez Gene	101206938

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]