PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.103760.5 | ||||||||
Common Name | Csa_6G497260, LOC101205974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36770.4 Da PI: 4.4846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 172 | 215 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L Cucsa.103760.5 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.193 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-15 | 169 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 172 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 173 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.09E-5 | 173 | 219 | No hit | No description |
CDD | cd04873 | 0.00283 | 267 | 308 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFTSFD ENPQMASSTF SNFPTIQTPN 60 DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG 120 FIETETAPSV CKVEMEQMGV REINGSIMGV AELGKRSSNK AKKIEGQPSK NLMAERRRRK 180 RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEEETGL DSNHVGFFNG 240 ISKEGKSNEV QVRNSPKFDV ERKEKETRID ICCATRPGLL LSTVNTLEAL GLEIQQCVIS 300 CFNDFSMQAS CAEVLFCCVL FVSFGL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 181 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143539.2 | 0.0 | PREDICTED: transcription factor bHLH93 isoform X2 | ||||
Refseq | XP_011657932.1 | 0.0 | PREDICTED: transcription factor bHLH93 isoform X1 | ||||
TrEMBL | A0A0A0KG39 | 0.0 | A0A0A0KG39_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143539.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-68 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.103760.5 |
Entrez Gene | 101205974 |
Publications ? help Back to Top | |||
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