PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103500.1
Common NameCsa_6G496990, LOC101218782
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 265aa    MW: 29259.3 Da    PI: 8.2803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18115169256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cucsa.103500.1 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALASELNLRPRQVEVWFQNRRARTK 169
                     788899***********************************************98 PP
2HD-ZIP_I/II1253.5e-40115204191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+ +++L+p++K++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
  Cucsa.103500.1 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALASELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELK-AL 204
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1796169IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18106172IPR009057Homeodomain-like
PROSITE profilePS5007117.346111171IPR001356Homeobox domain
SMARTSM003891.7E-15113175IPR001356Homeobox domain
PfamPF000466.4E-16115169IPR001356Homeobox domain
CDDcd000867.21E-16115172No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PfamPF021831.3E-10171205IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-25171214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGFDDLSNTS LLLGLGLTLP SNPPHLISQK PKKPLDLLCF PPPESEPSLT LGLSTVDTYP  60
SETPDLSRQP SPHSAISSFS GSRVKRERDV SGEEIEEEKA SSRVSDEDED GSNARKKLRL  120
TKEQSALLEE SFKLHSTLNP KQKQALASEL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL  180
KRCCETLTDE NRRLQKELQE LKALKLAQPL FMQMPAATLT MCPSCERIGG GAATVNGDGN  240
AKGPFSIATK PRFYKAFTKP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143421.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-100HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0A0KJS80.0A0A0A0KJS8_CUCSA; Homeobox-leucine zipper protein
STRINGXP_004170148.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-83HD-ZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  6. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]