PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.103390.1

Common Name

Csa_6G496380, LOC101216004

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 573aa MW: 62051.9 Da PI: 7.5846

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	224	268	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cucsa.103390.1 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 268 79****************************************985 PP
2	QLQ	57	6e-20	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q+l+yKyL++n+PvP++Ll +++k Cucsa.103390.1 155 GPFTQSQWIELEHQALIYKYLSSNVPVPSNLLIPLKK 191 59*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.3E-11	155	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-14	156	189	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.559	156	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.287	224	268	IPR014977	WRC domain
Pfam	PF08879	7.2E-21	225	267	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MDFGVVGLDS FVDSSDAPSP HPASDPDTNL KSLGSAFSKQ DRSGFVDDDW RSSKIPKTET 60 VSASSKTMPL HQGFPLLRSN TLLSSDGRQK EHMLSFSSVK SETSLQSKDS DLISRNTQNS 120 IFPYNQQKSS VYSRNTGCVS GSYSSMHGPV AGIRGPFTQS QWIELEHQAL IYKYLSSNVP 180 VPSNLLIPLK KSLYPYGLTC SSAGSLPPNT RWGSFHLGFS GNADPEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHINRGRH RSRKPVEGQT GHSAPGTTNP TAMVATMSTS LSSTVMPSGG 300 ASNNLPIIQH QLKSLHPVAA SDPGADAPVN RLLNKETVCS RIQESGGLSM MSSTVNLMSS 360 NDKSGAKQEI SIGESTQSEF GLVSTDSLLN PSQRGSYPNP KNYDSFLIFN DQESQDQDQH 420 PLRQFFEDWP KDQSSRSVMT WPEEFKSDWT QLSMSIPMSD FSSSSSSPTH EKLAQSPLRL 480 SRELEPIQMN LGVSRNDGEL VQKQGNQITM SWGSSMGGPL GEALTNGSSC VKASKVPPSL 540 NLLAEGWDGG QLGSSPTGVL QKATFCSLSN SS*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MDFGVVGLDS FVDSSDAPSP HPASDPDTNL KSLGSAFSKQ DRSGFVDDDW RSSKIPKTET  60
VSASSKTMPL HQGFPLLRSN TLLSSDGRQK EHMLSFSSVK SETSLQSKDS DLISRNTQNS  120
IFPYNQQKSS VYSRNTGCVS GSYSSMHGPV AGIRGPFTQS QWIELEHQAL IYKYLSSNVP  180
VPSNLLIPLK KSLYPYGLTC SSAGSLPPNT RWGSFHLGFS GNADPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHINRGRH RSRKPVEGQT GHSAPGTTNP TAMVATMSTS LSSTVMPSGG  300
ASNNLPIIQH QLKSLHPVAA SDPGADAPVN RLLNKETVCS RIQESGGLSM MSSTVNLMSS  360
NDKSGAKQEI SIGESTQSEF GLVSTDSLLN PSQRGSYPNP KNYDSFLIFN DQESQDQDQH  420
PLRQFFEDWP KDQSSRSVMT WPEEFKSDWT QLSMSIPMSD FSSSSSSPTH EKLAQSPLRL  480
SRELEPIQMN LGVSRNDGEL VQKQGNQITM SWGSSMGGPL GEALTNGSSC VKASKVPPSL  540
NLLAEGWDGG QLGSSPTGVL QKATFCSLSN SS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143409.1	0.0	PREDICTED: growth-regulating factor 1
TrEMBL	A0A0A0KG06	0.0	A0A0A0KG06_CUCSA; Uncharacterized protein
STRING	XP_004143409.1	0.0	(Cucumis sativus)
STRING	XP_004160932.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-109	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.103390.1
Entrez Gene	101216004

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]