PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103240.1
Common NameCsa_6G495710, LOC101202913
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 309aa    MW: 34040.2 Da    PI: 10.2315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
   Cucsa.103240.1  5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHQRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.743161IPR017930Myb domain
SuperFamilySSF466893.36E-15266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-13456IPR009057Homeodomain-like
SMARTSM007176.8E-6459IPR001005SANT/Myb domain
PfamPF002491.6E-7555IPR001005SANT/Myb domain
CDDcd116601.14E-17657No hitNo description
SMARTSM005264.5E-16116181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.25E-18116194IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.536118186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.8E-17120188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.5E-11123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHQRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNSMAIK HHDNLVPVST VLPNEEIVDA KPLAISNGTS RSNGPKEPLA  120
RLDKLISEAI NNLKEPRGSD RAAIAMYIEE HYWPPSNLKK LLSTKLKHMT ANGKLIKVKH  180
KYRIAPNSPL PGRRNTPLLL LEDKQTDSSK TEKSEVKIIT KSQVDSELSK MKVMTAEEAA  240
IAAARAVAEA EAAIAEAERA AREAEQAEAE AETAQVFAEA AMKALECRTF PNRSPIQKVL  300
LQDNKTLQ*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657903.10.0PREDICTED: telomere repeat-binding factor 2 isoform X1
RefseqXP_011657904.10.0PREDICTED: telomere repeat-binding factor 2 isoform X1
SwissprotQ9FJW52e-79TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0A0KJQ20.0A0A0A0KJQ2_CUCSA; Uncharacterized protein
STRINGXP_004141859.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-71MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]