PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102410.1
Common NameCsa_6G490870, LOC101216801
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 291aa    MW: 32695.6 Da    PI: 5.7828
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35101002101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw+ +g++f+v+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+k+ll k
  Cucsa.102410.1  10 FLTKTYQLVDDPATDDVVSWNPSGSTFIVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFQRGHKDLLIK 95 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Cucsa.102410.1  96 IRRRK 100
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-38394IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAQRSLPAPF LTKTYQLVDD PATDDVVSWN PSGSTFIVWK TADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFQRGHK DLLIKIRRRK AILITTPIRT LHTLKSGAAA  120
PNSSPSNSGE DIGSTSTSNP GSVDMGTIAQ FADLTEENDK LRKDNEMLNS ELVQTKKQCD  180
ELVAFLTDYL KVAPDQINRI MKQEANNRVC SEGGADNGRS EDEEEEEEEE EEEEGETLKL  240
FGVWLKGKKE KKMKRGREEK KGCSNGPHAK AMKSADEMHA PLMRSSNVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2559925129Heat shock factor protein 1
5d5v_B1e-2559925129Heat shock factor protein 1
5d5v_D1e-2559925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141916.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-108HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0A0KGC20.0A0A0A0KGC2_CUCSA; Uncharacterized protein
STRINGXP_004141916.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-72heat shock factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]