PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102090.1 | ||||||||
Common Name | Csa_6G489990, LOC101221146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29518.7 Da PI: 8.7195 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4.1e-16 | 15 | 102 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99 +l+ +++pkkf+e++g+ s + l+ ++g++W+v l r+ ++ ++l++GW +F + L+ g +vFkl gr++ +++v++f+ Cucsa.102090.1 15 NLEDPKMMIPKKFVEDYGK--LLSNSVNLKLSDGKEWRVGL--RRATNGaVWLEEGWDKFSEHYCLEFGLLLVFKLFdGRRSSNFKVTIFDP 102 4555679**********84..48889***************..5555555*************************6636688889****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-19 | 3 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-15 | 5 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 6 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-10 | 7 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 15 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPSSPKFFRI VLHRNLEDPK MMIPKKFVED YGKLLSNSVN LKLSDGKEWR VGLRRATNGA 60 VWLEEGWDKF SEHYCLEFGL LLVFKLFDGR RSSNFKVTIF DPTGVETKFI SPSPQIKEES 120 DSDSDESLES LTLHGDLKKR KNVSVSCSQS RRKMRKDDLF TVKTELEEEE EEEECKYIFR 180 EIPRCKERVI PKHEAKVSRK EQPSPEKVET VQRFSSKSDR KPSFEVVMRQ SNVQGRFNMV 240 SPSCFISPPL NSLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-137 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-137 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142019.2 | 1e-173 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0A0KG44 | 1e-172 | A0A0A0KG44_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170515.1 | 1e-173 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102090.1 |
Entrez Gene | 101221146 |
Publications ? help Back to Top | |||
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